Construct: ORF ccsbBroadEn_10576
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009012.1_s300c1, BRDN0000397402
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OSTCP1 (202459)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 58505 | OSTC | oligosaccharyltransferase c... | NM_021227.4 | 75.3% | 73.1% | (many diffs) |
| 2 | human | 58505 | OSTC | oligosaccharyltransferase c... | NM_001267818.2 | 64.6% | 61.4% | (many diffs) |
| 3 | human | 58505 | OSTC | oligosaccharyltransferase c... | NM_001267817.1 | 31.6% | 29.5% | (many diffs) |
| 4 | human | 202459 | OSTCP1 | oligosaccharyltransferase c... | NR_028496.1 | 29.7% | 1_231del;370T>A;589_1195del | |
| 5 | mouse | 66357 | Ostc | oligosaccharyltransferase c... | NM_025509.3 | 68.2% | 73.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 423
- ORF length:
- 357
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT TGTGTATGCT CTGATGGTGG TGTCTTACTT CCTCGTCACT GGAGGAATAA 121 TTTATGATGT TATTGTTGAA CCTCCAAGCA TTGGCTCTAT GACTGATGAA CACGGGCATC 181 AGAGGCCAGT AGCTTTCTTG GCCAACAGAG TAAATGAACA ATGTATTATG GAAGGACTTG 241 CATCCAGCTT CCTGTTTACA ATAGGAGGTT TAGGTTTCAT ATTCCTGGAC CGATGGAATG 301 CACCAAATAT CCCAAAACTC AATAGATTTC TTCTTCTATT CATTGGATTC GTTTGTGTCC 361 TATTGAGCTT TTTCATGGCT AGAGTATTCA TGAGAATGAA ACTGCCGGGC TATCTGATGG 421 GTTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 481 gcaacgaac