Construct: ORF ccsbBroadEn_10647
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018100.1_s300c1, BRDN0000455231
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RNF216P1 (441191)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54476 | RNF216 | ring finger protein 216 | XM_011515436.2 | 10.1% | 7.7% | (many diffs) |
| 2 | human | 54476 | RNF216 | ring finger protein 216 | XM_024446806.1 | 10.1% | 7.7% | (many diffs) |
| 3 | human | 54476 | RNF216 | ring finger protein 216 | XM_024446807.1 | 10.1% | 7.7% | (many diffs) |
| 4 | human | 441191 | RNF216P1 | ring finger protein 216 pse... | NR_023384.1 | 9.2% | 1_498del;724_2443del | |
| 5 | human | 54476 | RNF216 | ring finger protein 216 | XM_017012364.2 | 6.9% | 5.2% | (many diffs) |
| 6 | human | 441191 | RNF216P1 | ring finger protein 216 pse... | NR_015449.1 | 6.8% | 1_498del;580_581ins65;659_2270del | |
| 7 | human | 54476 | RNF216 | ring finger protein 216 | NM_207116.3 | 5.8% | 4.3% | (many diffs) |
| 8 | human | 54476 | RNF216 | ring finger protein 216 | XM_017012363.2 | 5.8% | 4.3% | (many diffs) |
| 9 | human | 54476 | RNF216 | ring finger protein 216 | NM_207111.4 | 5.4% | 4% | (many diffs) |
| 10 | human | 54476 | RNF216 | ring finger protein 216 | XM_005249785.2 | 5.4% | 4% | (many diffs) |
| 11 | human | 54476 | RNF216 | ring finger protein 216 | XM_024446805.1 | 5.4% | 4% | (many diffs) |
| 12 | mouse | 108086 | Rnf216 | ring finger protein 216 | XM_011240968.2 | 7.1% | 5.6% | (many diffs) |
| 13 | mouse | 108086 | Rnf216 | ring finger protein 216 | XM_006504648.3 | 6.9% | 5.5% | (many diffs) |
| 14 | mouse | 108086 | Rnf216 | ring finger protein 216 | XM_017320592.1 | 6.9% | 5.5% | (many diffs) |
| 15 | mouse | 108086 | Rnf216 | ring finger protein 216 | XM_017320593.1 | 6.9% | 5.5% | (many diffs) |
| 16 | mouse | 108086 | Rnf216 | ring finger protein 216 | NM_080561.4 | 5.4% | 4.3% | (many diffs) |
| 17 | mouse | 108086 | Rnf216 | ring finger protein 216 | XM_006504645.3 | 5.4% | 4.3% | (many diffs) |
| 18 | mouse | 108086 | Rnf216 | ring finger protein 216 | NM_207110.1 | 5.1% | 4% | (many diffs) |
| 19 | mouse | 108086 | Rnf216 | ring finger protein 216 | XM_006504644.3 | 5.1% | 4% | (many diffs) |
| 20 | mouse | 108086 | Rnf216 | ring finger protein 216 | XM_017320591.1 | 5.1% | 4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 294
- ORF length:
- 225
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCCGACTTC AAAGTGCTCA GTAGTCAGGA CATCATGTGG GCCCTGCACG 121 AGCTCAAAGG ACACTATGCA ATCACCCGAA AGGACTTTGA GAGTCATCAG CATATGGAAA 181 ATCTCACCAG CCAGGATGAG GTACCCAGAG ATACCAGGCC TTTTCTGATG CCATTAAAAA 241 ATGGCAGGAG CTATCACCAG AAACCAGTGG AAAAAGGAAA AAGAGAAAAG AAATTGCCAA 301 CTTTCTTGTA CAAAGTTGGc attataagaa agcattgctt atcaatttgt tgcaacgaac