Construct: ORF ccsbBroadEn_10689
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013720.1_s300c1, BRDN0000394108
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATM (472)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 472 | ATM | ATM serine/threonine kinase | XM_006718845.2 | 7.6% | 7.6% | 394_5124del |
| 2 | human | 472 | ATM | ATM serine/threonine kinase | XM_017017792.2 | 7.3% | 7.3% | 1_4044del;4438_5325del |
| 3 | human | 472 | ATM | ATM serine/threonine kinase | XM_017017791.1 | 6% | 6% | 1_4044del;4438_6474del |
| 4 | human | 472 | ATM | ATM serine/threonine kinase | XR_002957150.1 | 5.9% | 1_4777del;5171_6577del | |
| 5 | human | 472 | ATM | ATM serine/threonine kinase | XM_011542845.2 | 5% | 5% | 1_2736del;3130_7860del |
| 6 | human | 472 | ATM | ATM serine/threonine kinase | XM_011542844.3 | 4.8% | 4.8% | 1_3000del;3394_8124del |
| 7 | human | 472 | ATM | ATM serine/threonine kinase | XM_011542843.2 | 4.4% | 4.4% | 1_4044del;4438_8736del |
| 8 | human | 472 | ATM | ATM serine/threonine kinase | XM_011542842.3 | 4.3% | 4.3% | 1_3879del;4273_9003del |
| 9 | human | 472 | ATM | ATM serine/threonine kinase | NM_000051.3 | 4.2% | 4.2% | 1_4044del;4438_9168del |
| 10 | human | 472 | ATM | ATM serine/threonine kinase | NM_001351834.2 | 4.2% | 4.2% | 1_4044del;4438_9168del |
| 11 | human | 472 | ATM | ATM serine/threonine kinase | XM_005271562.5 | 4.2% | 4.2% | 1_4044del;4438_9168del |
| 12 | human | 472 | ATM | ATM serine/threonine kinase | XM_006718843.4 | 4.2% | 4.2% | 1_4044del;4438_9168del |
| 13 | human | 472 | ATM | ATM serine/threonine kinase | XM_011542840.3 | 4.2% | 4.2% | 1_4044del;4438_9168del |
| 14 | human | 472 | ATM | ATM serine/threonine kinase | XM_017017789.2 | 4.2% | 4.2% | 1_4044del;4438_9168del |
| 15 | human | 472 | ATM | ATM serine/threonine kinase | XM_017017790.2 | 4.2% | 4.2% | 1_4044del;4438_9168del |
| 16 | mouse | 11920 | Atm | ataxia telangiectasia mutated | XM_011242386.1 | 5.1% | 5.5% | (many diffs) |
| 17 | mouse | 11920 | Atm | ataxia telangiectasia mutated | XM_006509956.3 | 3.6% | 3.9% | (many diffs) |
| 18 | mouse | 11920 | Atm | ataxia telangiectasia mutated | NM_007499.2 | 3.6% | 3.9% | (many diffs) |
| 19 | mouse | 11920 | Atm | ataxia telangiectasia mutated | XM_011242385.2 | 3.6% | 3.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 459
- ORF length:
- 393
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC GTTACATGAG CCAGCAAATT CTAGTGCCAG TCAGAGCACT GACCTCTGTG 121 ACTTTTCAGG GGATTTGGAT CCTGCTCCTA ATCCACCTCA TTTTCCATCG CATGTGATTA 181 AAGCAACATT TGCCTATATC AGCAATTGTC ATAAAACCAA GTTAAAAAGC ATTTTAGAAA 241 TTCTTTCCAA AAGCCCTGAT TCCTATCAGA AAATTCTTCT TGCCATATGT GAGCAAGCAG 301 CTGAAACAAA TAATGTTTAT AAGAAGCACA GAATTCTTAA AATATATCAC CTGTTTGTTA 361 GTTTATTACT GAAAGATATA AAAAGTGGCT TAGGAGGAGC TTGGGCCTTT GTTCTTCGAG 421 ACGTTATTTA TACTTTGATT CACTATATCA ACCAAAGGTA CCCAACTTTC TTGTACAAAG 481 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac