Construct: ORF ccsbBroadEn_10809
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005991.1_s300c1, BRDN0000385690
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ETS1 (2113)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2113 | ETS1 | ETS proto-oncogene 1, trans... | NM_001330451.2 | 74.5% | 70.9% | (many diffs) |
| 2 | human | 2113 | ETS1 | ETS proto-oncogene 1, trans... | XM_017017317.1 | 63.8% | 56.3% | (many diffs) |
| 3 | human | 2113 | ETS1 | ETS proto-oncogene 1, trans... | NM_005238.4 | 60.8% | 59.4% | (many diffs) |
| 4 | human | 2113 | ETS1 | ETS proto-oncogene 1, trans... | XM_017017315.2 | 57.1% | 52.3% | (many diffs) |
| 5 | human | 2113 | ETS1 | ETS proto-oncogene 1, trans... | XM_011542650.1 | 56.4% | 55.1% | (many diffs) |
| 6 | human | 2113 | ETS1 | ETS proto-oncogene 1, trans... | NM_001143820.2 | 53.2% | 48.6% | (many diffs) |
| 7 | human | 2113 | ETS1 | ETS proto-oncogene 1, trans... | XM_017017314.1 | 53.2% | 48.6% | (many diffs) |
| 8 | mouse | 23871 | Ets1 | E26 avian leukemia oncogene... | NM_001038642.1 | 69.2% | 68.2% | (many diffs) |
| 9 | mouse | 23871 | Ets1 | E26 avian leukemia oncogene... | NM_011808.2 | 56.2% | 57% | (many diffs) |
| 10 | mouse | 23871 | Ets1 | E26 avian leukemia oncogene... | XM_006510269.1 | 48.9% | 47.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 882
- ORF length:
- 816
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GGCGGCCGTC GATCTCAAGC CGACTCTCAC CATCATCAAG ACGGAAAAAG 121 TCGATCTGGA GCTTTTCCCC TCCCCGGATA TGGAATGTGC AGATGTCCCA CTATTAACTC 181 CAAGCAGCAA AGAAATGATG TCTCAAGCAT TAAAAGCTAC TTTCAGTGGT TTCACTAAAG 241 AACAGCAACG ACTGGGGATC CCAAAAGACC CCCGGCAGTG GACAGAAACC CATGTTCGGG 301 ACTGGGTGAT GTGGGCTGTG AATGAATTCA GCCTGAAAGG TGTAGACTTC CAGAAGTTCT 361 GTATGAATGG AGCAGCCCTC TGCGCCCTGG GTAAAGACTG CTTTCTCGAG CTGGCCCCAG 421 ACTTTGTTGG GGACATCTTA TGGGAACATC TAGAGATCCT GCAGAAAGAG GATGTGAAAC 481 CATATCAAGT TAATGGAGTC AACCCAGCCT ATCCAGAATC CCGCTATACC TCGGATTACT 541 TCATTAGCTA TGGTATTGAG CATGCCCAGT GTGTTCCACC ATCGGAGTTC TCAGAGCCCA 601 GCTTCATCAC AGAGTCCTAT CAGACGCTCC ATCCCATCAG CTCGGAAGAG CTCCTCTCCC 661 TCAAGTATGA GAATGACTAC CCCTCGGTCA TTCTCCGAGA CCCTCTCCAG ACAGACACCT 721 TGCAGAATGA CTACTTTGCT ATCAAACAAG AAGTCGTCAC CCCAGACAAC ATGTGCATGG 781 GGAGGACCAG TCGTGGTAAA CTCGGGGGCC AGGACTCTTT TGAAAGCATA GAGAGCTACG 841 ATAGTTGTGG CCAGGAGATG GGGAAAGAGG AAAAACAAAC CTACCCAACT TTCTTGTACA 901 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac