Construct: ORF ccsbBroadEn_10841
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001057.1_s300c1, BRDN0000397746
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GBP3 (2635)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2635 | GBP3 | guanylate binding protein 3 | NM_001319181.1 | 53.2% | 53.3% | 870_1632delinsC |
| 2 | human | 2635 | GBP3 | guanylate binding protein 3 | XM_006710574.3 | 50.9% | 51% | 870_1704delinsC |
| 3 | human | 2635 | GBP3 | guanylate binding protein 3 | XM_011541234.2 | 50.2% | 43.8% | (many diffs) |
| 4 | human | 2635 | GBP3 | guanylate binding protein 3 | NM_018284.3 | 48.6% | 48.7% | 870_1785delinsC |
| 5 | human | 2633 | GBP1 | guanylate binding protein 1 | NM_002053.3 | 45.8% | 45.6% | (many diffs) |
| 6 | human | 2635 | GBP3 | guanylate binding protein 3 | NM_001319179.1 | 35.4% | 35.4% | 0_1ins237;633_1548delinsC |
| 7 | human | 2635 | GBP3 | guanylate binding protein 3 | XM_005270743.2 | 35.4% | 35.4% | 0_1ins237;633_1548delinsC |
| 8 | human | 2635 | GBP3 | guanylate binding protein 3 | XM_011541233.1 | 35.4% | 35.4% | 0_1ins237;633_1548delinsC |
| 9 | human | 2635 | GBP3 | guanylate binding protein 3 | NR_135007.1 | 34% | 1_205del;1076_2557del | |
| 10 | human | 2635 | GBP3 | guanylate binding protein 3 | NM_001319180.1 | 25.6% | 25% | (many diffs) |
| 11 | human | 2635 | GBP3 | guanylate binding protein 3 | XM_017001013.1 | 25.6% | 25% | (many diffs) |
| 12 | human | 2633 | GBP1 | guanylate binding protein 1 | XM_024446351.1 | 24.4% | 23.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 936
- ORF length:
- 870
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TCCAGAGATC CACATGACAG GCCCAATGTG CCTCATTGAG AACACTAATG 121 GGGAACTGGT GGCGAATCCA GAAGCTCTGA AAATCCTGTC TGCCATTACA CAGCCTGTGG 181 TGGTGGTGGC AATTGTGGGC CTCTACCGCA CAGGAAAATC CTACCTGATG AACAAGCTAG 241 CTGGGAAGAA TAAGGGCTTC TCTCTGGGCT CCACAGTGAA ATCTCACACC AAAGGAATCT 301 GGATGTGGTG TGTGCCTCAC CCCAAAAAGC CAGAACACAC CTTAGTCCTG CTTGACACTG 361 AGGGCCTGGG AGATGTAAAG AAGGGTGACA ACCAGAATGA CTCCTGGATC TTCACCCTGG 421 CCGTCCTCCT GAGCAGCACT CTCGTGTACA ATAGCATGGG AACCATCAAC CAGCAGGCTA 481 TGGACCAACT GTACTATGTG ACAGAGCTGA CACATCGAAT CCGATCAAAA TCCTCACCTG 541 ATGAGAATGA GAATGAGGAT TCAGCTGACT TTGTGAGCTT CTTCCCAGAT TTTGTGTGGA 601 CACTGAGAGA TTTCTCCCTG GACTTGGAAG CAGATGGACA ACCCCTCACA CCAGATGAGT 661 ACCTGGAGTA TTCCCTGAAG CTAACGCAAG GTACCAGTCA AAAAGATAAA AATTTTAATC 721 TGCCCCGACT CTGTATCCGG AAGTTCTTCC CAAAGAAAAA ATGTTTTGTC TTCGATCTGC 781 CCATTCACCG CAGGAAGCTT GCCCAGCTTG AGAAACTACA AGATGAAGAG CTGGACCCTG 841 AATTTGTGCA ACAAGTAGCA GACTTCTGTT CCTACATCTT TAGCAATTCC AAAACTAAAA 901 CTCTTTCAGG AGGCATCAAG GTCAATGGGC CTCGCTGCCC AACTTTCTTG TACAAAGTtg 961 gcattataag aaagcattgc ttatcaattt gttgcaacga ac