Construct: ORF ccsbBroadEn_10974
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008983.1_s300c1, BRDN0000392321
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MOG (4340)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4340 | MOG | myelin oligodendrocyte glyc... | NM_001363610.2 | 99.7% | 99.6% | 15A>G;520A>G |
| 2 | human | 4340 | MOG | myelin oligodendrocyte glyc... | NM_206809.4 | 83.2% | 82.4% | (many diffs) |
| 3 | human | 4340 | MOG | myelin oligodendrocyte glyc... | NM_002433.5 | 82.5% | 82.3% | (many diffs) |
| 4 | human | 4340 | MOG | myelin oligodendrocyte glyc... | NM_001008228.3 | 74.2% | 70.9% | (many diffs) |
| 5 | human | 4340 | MOG | myelin oligodendrocyte glyc... | NM_206811.4 | 73.6% | 70.8% | (many diffs) |
| 6 | human | 4340 | MOG | myelin oligodendrocyte glyc... | NM_206812.4 | 70% | 69.2% | (many diffs) |
| 7 | human | 4340 | MOG | myelin oligodendrocyte glyc... | NM_206810.4 | 69.4% | 69.1% | (many diffs) |
| 8 | human | 4340 | MOG | myelin oligodendrocyte glyc... | NM_001008229.3 | 69% | 66.7% | (many diffs) |
| 9 | human | 4340 | MOG | myelin oligodendrocyte glyc... | NM_206814.6 | 43.9% | 43.2% | (many diffs) |
| 10 | human | 4340 | MOG | myelin oligodendrocyte glyc... | NM_001170418.2 | 34.9% | 31.7% | (many diffs) |
| 11 | mouse | 17441 | Mog | myelin oligodendrocyte glyc... | NM_010814.2 | 70.1% | 71.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 951
- ORF length:
- 885
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC AAGCTTATCG AGACCCTCTC TGCCCAGCTG CCTCTGCTCC TTCCTCCTCC 121 TCCTCCTCCT CCAAGTGTCT TCCAGCTATG CAGGGCAGTT CAGAGTGATA GGACCAAGAC 181 ACCCTATCCG GGCTCTGGTC GGGGATGAAG TGGAATTGCC ATGTCGCATA TCTCCTGGGA 241 AGAACGCTAC AGGCATGGAG GTGGGGTGGT ACCGCCCCCC CTTCTCTAGG GTGGTTCATC 301 TCTACAGAAA TGGCAAGGAC CAAGATGGAG ACCAGGCACC TGAATATCGG GGCCGGACAG 361 AGCTGCTGAA AGATGCTATT GGTGAGGGAA AGGTGACTCT CAGGATCCGG AATGTAAGGT 421 TCTCAGATGA AGGAGGTTTC ACCTGCTTCT TCCGAGATCA TTCTTACCAA GAGGAGGCAG 481 CAATGGAATT GAAAGTAGAA GATCCTTTCT ACTGGGTGAG CCCTGGAGTG CTGGTTCTCC 541 TCGCGGTGCT GCCTGTGCTC CTCCTGCAGA TCACTGTTGG CCTCGTCTTC CTCTGCCTGC 601 AGTACAGACT GAGAGGAAAA CTTCGAGCAG AGATAGAGAA TCTCCACCGG ACTTTTGATC 661 CCCACTTTCT GAGGGTGCCC TGCTGGAAGA TAACCCTGTT TGTAATTGTG CCGGTTCTTG 721 GACCCTTGGT TGCCTTGATC ATCTGCTACA ACTGGCTACA TCGAAGACTA GCAGGGCAAT 781 TCCTTGAAGA GCTACGTAAG TTCTCTTCTC TCTGTTATAA GCAGAGAATA AAAAGCCAGG 841 AAAGGGAGAC AGAAGCAACA AGAGGAAGAG GCGGGCTATT GAGGGATCAC ATTCCCAGAG 901 GAAAGGAGGA GCTGGAGAGC CTGGGTGGAG GGAAGACTCC TCCTGGGAGG TACCCAACTT 961 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac