Construct: ORF ccsbBroadEn_11022
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005815.1_s300c1, BRDN0000385309
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDK16 (5127)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5127 | CDK16 | cyclin dependent kinase 16 | NM_006201.5 | 90.3% | 90.3% | 41_184del |
| 2 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_017029570.2 | 90.3% | 90.3% | 41_184del |
| 3 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_017029571.1 | 90.3% | 90.3% | 41_184del |
| 4 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_017029572.2 | 90.3% | 90.3% | 41_184del |
| 5 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_017029573.1 | 90.3% | 90.3% | 41_184del |
| 6 | human | 5127 | CDK16 | cyclin dependent kinase 16 | NM_033018.4 | 89.2% | 89.2% | 1_18del;59_202del |
| 7 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543924.2 | 87.9% | 87.2% | (many diffs) |
| 8 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543925.3 | 87.9% | 87.2% | (many diffs) |
| 9 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543926.1 | 87.9% | 87.2% | (many diffs) |
| 10 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543927.3 | 87.9% | 87.2% | (many diffs) |
| 11 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543928.1 | 87.9% | 87.2% | (many diffs) |
| 12 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543923.2 | 86.9% | 86.2% | (many diffs) |
| 13 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_017029569.1 | 82.5% | 82.5% | 1_141del;182_325del |
| 14 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543922.1 | 81% | 80.3% | (many diffs) |
| 15 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543921.1 | 80.4% | 79.7% | (many diffs) |
| 16 | human | 5127 | CDK16 | cyclin dependent kinase 16 | NM_001170460.1 | 78.5% | 78.5% | 1_222del;263_406del |
| 17 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543920.3 | 76.6% | 76% | (many diffs) |
| 18 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XR_949017.3 | 40% | (many diffs) | |
| 19 | mouse | 18555 | Cdk16 | cyclin-dependent kinase 16 | NM_001310456.1 | 88.2% | 91.7% | (many diffs) |
| 20 | mouse | 18555 | Cdk16 | cyclin-dependent kinase 16 | XM_017318425.1 | 88.2% | 91.7% | (many diffs) |
| 21 | mouse | 18555 | Cdk16 | cyclin-dependent kinase 16 | NM_011049.5 | 83.2% | 88.7% | (many diffs) |
| 22 | mouse | 18555 | Cdk16 | cyclin-dependent kinase 16 | XM_006527570.1 | 83.2% | 88.7% | (many diffs) |
| 23 | mouse | 18555 | Cdk16 | cyclin-dependent kinase 16 | XM_017318424.1 | 81.8% | 85.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1410
- ORF length:
- 1344
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TCGGATGAAG AAGATCAAAC GGCAGCTGTC AATGACACTC AGCTCTGCAC 121 CAGAGATTGT GCACGAGGAC TTGAAGATGG GGTCTGATGG GGAGAGTGAC CAGGCTTCAG 181 CCACGTCCTC GGATGAGGTG CAGTCTCCAG TGAGAGTGCG TATGCGCAAC CATCCCCCAC 241 GCAAGATCTC CACTGAGGAC ATCAACAAGC GCCTATCACT ACCAGCTGAC ATCCGGCTGC 301 CTGAGGGCTA CCTGGAGAAG CTGACCCTCA ATAGCCCCAT CTTTGACAAG CCCCTCAGCC 361 GCCGCCTCCG TCGTGTCAGC CTATCTGAGA TTGGCTTTGG GAAACTGGAG ACCTACATTA 421 AGCTGGACAA ACTGGGCGAG GGTACCTATG CCACCGTCTA CAAAGGCAAA AGCAAGCTCA 481 CAGACAACCT TGTGGCACTC AAGGAGATCA GACTGGAACA TGAAGAGGGG GCACCCTGCA 541 CCGCCATCCG GGAAGTGTCC CTGCTCAAGG ACCTCAAACA CGCCAACATC GTTACGCTAC 601 ATGACATTAT CCACACGGAG AAGTCCCTCA CCCTTGTCTT TGAGTACCTG GACAAGGACC 661 TGAAGCAGTA CCTGGATGAC TGTGGGAACA TCATCAACAT GCACAACGTG AAACTGTTCC 721 TGTTCCAGCT GCTCCGTGGC CTGGCCTACT GCCACCGGCA GAAGGTGCTA CACCGAGACC 781 TCAAGCCCCA GAACCTGCTC ATCAACGAGA GGGGAGAGCT CAAGCTGGCT GACTTTGGCC 841 TGGCCCGAGC CAAGTCAATC CCAACAAAGA CATACTCCAA TGAGGTGGTG ACACTGTGGT 901 ACCGGCCCCC TGACATCCTG CTTGGGTCCA CGGACTACTC CACTCAGATT GACATGTGGG 961 GTGTGGGCTG CATCTTCTAT GAGATGGCCA CAGGCCGTCC CCTCTTTCCG GGCTCCACGG 1021 TGGAGGAACA GCTACACTTC ATCTTCCGTA TCTTAGGAAC CCCAACTGAG GAGACGTGGC 1081 CAGGCATCCT GTCCAACGAG GAGTTCAAGA CATACAACTA CCCCAAGTAC CGAGCCGAGG 1141 CCCTTTTGAG CCACGCACCC CGACTTGATA GCGACGGGGC CGACCTCCTC ACCAAGCTGT 1201 TGCAGTTTGA GGGTCGAAAT CGGATCTCCG CAGAGGATGC CATGAAACAT CCATTCTTCC 1261 TCAGTCTGGG GGAGCGGATC CACAAACTTC CTGACACTAC TTCCATATTT GCACTAAAGG 1321 AGATTCAGCT ACAAAAGGAG GCCAGCCTTC GGTCTTCGTC GATGCCTGAC TCAGGCAGGC 1381 CAGCTTTCCG CGTGGTGGAC ACCGAGTTCT ACCCAACTTT CTTGTACAAA GTtggcatta 1441 taagaaagca ttgcttatca atttgttgca acgaac