Construct: ORF ccsbBroadEn_11087

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005714.1_s300c1, BRDN0000396114
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RAD51C (5889)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5889 RAD51C RAD51 paralog C NM_002876.3 99.2% 99.2% 403_405delTGG
2 human 5889 RAD51C RAD51 paralog C NR_103873.1 44.8% 1_71del;112_113ins103;371_563del
3 human 5889 RAD51C RAD51 paralog C XM_006722002.4 39.1% 39.1% 403_1026del
4 human 5889 RAD51C RAD51 paralog C NM_058216.3 35.6% 35.6% 403_1128del
5 human 5889 RAD51C RAD51 paralog C XM_006722001.4 35.5% 35.5% 403_1131del
6 human 5889 RAD51C RAD51 paralog C XR_934514.3 23.1% 1_504del;907_1738del
7 human 5889 RAD51C RAD51 paralog C XR_934513.3 21.2% 1_504del;907_1889del
8 human 5889 RAD51C RAD51 paralog C NR_103872.2 16.7% 1_42del;445_2395del
9 mouse 114714 Rad51c RAD51 paralog C XM_011248671.2 43.7% 41.9% (many diffs)
10 mouse 114714 Rad51c RAD51 paralog C NM_053269.3 29.7% 28.5% (many diffs)
11 mouse 114714 Rad51c RAD51 paralog C XM_006532009.3 28.7% 26.4% (many diffs)
12 mouse 114714 Rad51c RAD51 paralog C XR_388326.3 16.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
468
ORF length:
402
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCG CGGGAAGACG TTCCGCTTTG AAATGCAGCG GGATTTGGTG AGTTTCCCGC
121TGTCTCCAGC GGTGCGGGTG AAGCTGGTGT CTGCGGGGTT CCAGACTGCT GAGGAACTCC
181TAGAGGTGAA ACCCTCCGAG CTTAGCAAAG AAGTTGGGAT ATCTAAAGCA GAAGCCTTAG
241AAACTCTGCA AATTATCAGA AGAGAATGTC TCACAAATAA ACCAAGATAT GCTGGTACAT
301CTGAGTCACA CAAGAAGTGT ACAGCACTGG AACTTCTTGA GCAGGAGCAT ACCCAGGGCT
361TCATAATCAC CTTCTGTTCA GCACTAGATG ATATTCTTGG GGGTGGAGTG CCCTTAATGA
421AAACAACAGA AATTTGTGGT GCACCAGGTG TTGGAAAAAC ACAATTATGC CCAACTTTCT
481TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)