Transcript: Human XM_006722002.4

PREDICTED: Homo sapiens RAD51 paralog C (RAD51C), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RAD51C (5889)
Length:
1683
CDS:
505..1533

Additional Resources:

NCBI RefSeq record:
XM_006722002.4
NBCI Gene record:
RAD51C (5889)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006722002.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000149745 GAAGCCTTAGAAACTCTGCAA pLKO.1 670 CDS 100% 2.640 3.696 N RAD51C n/a
2 TRCN0000330045 AGCATACCCAGGGCTTCATAA pLKO_005 785 CDS 100% 13.200 10.560 N RAD51C n/a
3 TRCN0000148215 GCAAAGAAGTTGGGATATCTA pLKO.1 644 CDS 100% 5.625 3.938 N RAD51C n/a
4 TRCN0000330118 GCAAAGAAGTTGGGATATCTA pLKO_005 644 CDS 100% 5.625 3.938 N RAD51C n/a
5 TRCN0000146298 CAGAAGAGAATGTCTCACAAA pLKO.1 696 CDS 100% 4.950 3.465 N RAD51C n/a
6 TRCN0000330044 CAGAAGAGAATGTCTCACAAA pLKO_005 696 CDS 100% 4.950 3.465 N RAD51C n/a
7 TRCN0000147658 GCTTCATAATCACCTTCTGTT pLKO.1 797 CDS 100% 4.950 3.465 N RAD51C n/a
8 TRCN0000147369 GTTGGGATATCTAAAGCAGAA pLKO.1 652 CDS 100% 4.050 2.835 N RAD51C n/a
9 TRCN0000330043 GTTGGGATATCTAAAGCAGAA pLKO_005 652 CDS 100% 4.050 2.835 N RAD51C n/a
10 TRCN0000071261 CCAGGGCTTCATAATCACCTT pLKO.1 792 CDS 100% 2.640 1.848 N Rad51c n/a
11 TRCN0000335778 CCAGGGCTTCATAATCACCTT pLKO_005 792 CDS 100% 2.640 1.848 N Rad51c n/a
12 TRCN0000149637 GCTTAGCAAAGAAGTTGGGAT pLKO.1 639 CDS 100% 2.640 1.848 N RAD51C n/a
13 TRCN0000146467 CTGAGTCACACAAGAAGTGTA pLKO.1 740 CDS 100% 4.950 2.970 N RAD51C n/a
14 TRCN0000348673 GATGACAACAAAGATTGATAA pLKO_005 1359 CDS 100% 13.200 9.240 N Rad51c n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006722002.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11087 pDONR223 100% 39.1% 39.1% None 403_1026del n/a
2 ccsbBroad304_11087 pLX_304 0% 39.1% 39.1% V5 403_1026del n/a
3 TRCN0000467082 AAGGCTGCAACCCTGACGCTCCCA pLX_317 41.9% 39.1% 39.1% V5 403_1026del n/a
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