Transcript: Human NR_103872.2

Homo sapiens RAD51 paralog C (RAD51C), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
RAD51C (5889)
Length:
2395
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_103872.2
NBCI Gene record:
RAD51C (5889)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_103872.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000149745 GAAGCCTTAGAAACTCTGCAA pLKO.1 208 3UTR 100% 2.640 3.696 N RAD51C n/a
2 TRCN0000330045 AGCATACCCAGGGCTTCATAA pLKO_005 323 3UTR 100% 13.200 10.560 N RAD51C n/a
3 TRCN0000148215 GCAAAGAAGTTGGGATATCTA pLKO.1 182 3UTR 100% 5.625 3.938 N RAD51C n/a
4 TRCN0000330118 GCAAAGAAGTTGGGATATCTA pLKO_005 182 3UTR 100% 5.625 3.938 N RAD51C n/a
5 TRCN0000146298 CAGAAGAGAATGTCTCACAAA pLKO.1 234 3UTR 100% 4.950 3.465 N RAD51C n/a
6 TRCN0000330044 CAGAAGAGAATGTCTCACAAA pLKO_005 234 3UTR 100% 4.950 3.465 N RAD51C n/a
7 TRCN0000147658 GCTTCATAATCACCTTCTGTT pLKO.1 335 3UTR 100% 4.950 3.465 N RAD51C n/a
8 TRCN0000147369 GTTGGGATATCTAAAGCAGAA pLKO.1 190 3UTR 100% 4.050 2.835 N RAD51C n/a
9 TRCN0000330043 GTTGGGATATCTAAAGCAGAA pLKO_005 190 3UTR 100% 4.050 2.835 N RAD51C n/a
10 TRCN0000071261 CCAGGGCTTCATAATCACCTT pLKO.1 330 3UTR 100% 2.640 1.848 N Rad51c n/a
11 TRCN0000335778 CCAGGGCTTCATAATCACCTT pLKO_005 330 3UTR 100% 2.640 1.848 N Rad51c n/a
12 TRCN0000149637 GCTTAGCAAAGAAGTTGGGAT pLKO.1 177 3UTR 100% 2.640 1.848 N RAD51C n/a
13 TRCN0000146467 CTGAGTCACACAAGAAGTGTA pLKO.1 278 3UTR 100% 4.950 2.970 N RAD51C n/a
14 TRCN0000348673 GATGACAACAAAGATTGATAA pLKO_005 730 3UTR 100% 13.200 9.240 N Rad51c n/a
15 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 1636 3UTR 100% 5.625 2.813 Y KLHL30 n/a
16 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 1636 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_103872.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11087 pDONR223 100% 16.7% None 1_42del;445_2395del n/a
2 ccsbBroad304_11087 pLX_304 0% 16.7% V5 1_42del;445_2395del n/a
3 TRCN0000467082 AAGGCTGCAACCCTGACGCTCCCA pLX_317 41.9% 16.7% V5 1_42del;445_2395del n/a
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