Construct: ORF ccsbBroadEn_11124

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002979.1_s300c1, BRDN0000390437
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SDHA (6389)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6389 SDHA succinate dehydrogenase com... NM_001294332.1 83.4% 82.1% (many diffs)
2 human 6389 SDHA succinate dehydrogenase com... NM_004168.4 77.7% 78% (many diffs)
3 human 6389 SDHA succinate dehydrogenase com... XM_011514072.2 73.6% 72.7% (many diffs)
4 human 6389 SDHA succinate dehydrogenase com... XM_024446143.1 68.2% 65% (many diffs)
5 human 6389 SDHA succinate dehydrogenase com... NM_001330758.1 65.6% 65.8% (many diffs)
6 human 6389 SDHA succinate dehydrogenase com... XM_017009685.2 64.3% 62.5% (many diffs)
7 human 727956 SDHAP2 succinate dehydrogenase com... NR_003265.3 62.9% (many diffs)
8 human 6389 SDHA succinate dehydrogenase com... XM_011514073.2 61.9% 60.8% (many diffs)
9 human 255812 SDHAP1 succinate dehydrogenase com... NR_003264.2 57.4% (many diffs)
10 human 6389 SDHA succinate dehydrogenase com... XR_002956167.1 28.4% (many diffs)
11 mouse 66945 Sdha succinate dehydrogenase com... NM_023281.1 67% 73.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1623
ORF length:
1557
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC GGGGGTCCGG GGCCTGTCGC GGCTGCTGAG CGCTCGGCGC CTGGCGCTGG
121CCAAGGCGTG GCCAACAGTG TTGCAAACAG GAACCCGAGG TTTTCACTTC ACTGTTGATG
181GGAACAAGAG GGCATCTGCT AAAGTTTCAG ATTCCATTTC TGCTCAGTAT CCAGTAGTGG
241ATCATGAATT TGATGCAGTG GTGGTAGGCG CTGGAGGGGC AGGCTTGCGA GCTGCATTTG
301GCCTTTCTGA GGCAGGGTTT AATACAGCAT GTGTTACCAA GCTGTTTCCT ACCAGGTCAC
361ACACTGTTGC AGCGCAGGGA GGAATCAATG CTGCTCTGGG GAACATGGAG GAGGACAACT
421GGAGGTGGCA TTTCTACGAC ACCAGCACTG GCGACGGCAC GGCCATGATC ACCAGGGCAG
481GCCTTCCTTG CCAGGACCTA GAGTTTGTTC AGTTCCACCC CACAGGCATA TATGGTGCTG
541GTTGTCTCAT TACGGAAGGA TGTCGTGGAG AGGGAGGCAT TCTCATTAAC AGTCAAGGCG
601AAAGGTTTAT GGAGCGATAC GCCCCTGTCG CGAAGGACCT GGCGTCTAGA GATGTGGTGT
661CTCGGTCGAT GACTCTGGAG ATCCGAGAAG GAAGAGGCTG TGGCCCTGAG AAAGATCACG
721TCTACCTGCA GCTGCACCAC CTACCTCCAG AGCAGCTGGC CACGCGCCTG CCTGGCATTT
781CAGAGACAGC CATGATCTTT GCTGGCGTGG ACGTCACGAA GGAGCCGATC CCTGTCCTCC
841CCACCGTGCA TTATAACATG GGCGGCATTC CCACCAACTA CAAGGGGCAG GTCCTGAGGC
901ACGTGAATGG CCAGGATCAG ATTGTGCCCG GCCTGTACGC CTGTGGGGAG GCCGCCTGTG
961CCTCGGTACA TGGTGCCAAC CGCCTCGGGG CAAACTCGCT CTTGGACCTG GTTGTCTTTG
1021GTCGGGCATG TGCCCTGAGC ATCGAAGAGT CATGCAGGCC TGGAGATAAA GTCCCTCCAA
1081TTAAACCAAA CGCTGGGGAA GAATCTGTCA TGAATCTTGA CAAATTGAGA TTTGCTGATG
1141GAAGCATAAG AACATCGGAA CTGCGACTCA GCATGCAGAA GTCAATGCAA AATCATGCTG
1201CCGTGTTCCG TGTGGGAAGC GTGTTGCAAG AAGGTTGTGG GAAAATCAGC AAGCTCTATG
1261GAGACCTAAA GCACCTGAAG ACGTTCGACC GGGGAATGGT CTGGAACACA GACCTGGTGG
1321AGACCCTGGA GCTGCAGAAC CTGATGCTGT GTGCGCTGCA GACCATCTAC GGAGCAGAGG
1381CGCGGAAGGA GTCACGGGGC GCGCATGCCA GGGAAGACTA CAAGGTGCGG ATTGATGAGT
1441ACGATTACTC CAAGCCCATC CAGGGGCAAC AGAAGAAGCC CTTTGAGGAG CACTGGAGGA
1501AGCACACCCT GTCCTTTGTG GACGTTGGCA CTGGGAAGGT CACTCTGGAA TATAGACCCG
1561TAATCGACAA AACTTTGAAC GAGGCTGACT GTGCCACCGT CCCGCCAGCC ATTCGCTCCT
1621ACTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1681gcaacgaac

Download FASTA (ORF) (Full)