Construct: ORF ccsbBroadEn_11222
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005011.1_s300c1, BRDN0000394211
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- XPNPEP1 (7511)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7511 | XPNPEP1 | X-prolyl aminopeptidase 1 | NM_001324132.2 | 100% | 100% | |
| 2 | human | 7511 | XPNPEP1 | X-prolyl aminopeptidase 1 | NM_001324136.1 | 94.2% | 94.2% | 1_114del |
| 3 | human | 7511 | XPNPEP1 | X-prolyl aminopeptidase 1 | NM_020383.4 | 93.5% | 93.5% | 1_129del |
| 4 | human | 7511 | XPNPEP1 | X-prolyl aminopeptidase 1 | NM_001324135.2 | 90.9% | 90.9% | 1_129del;1131_1132ins51 |
| 5 | human | 7511 | XPNPEP1 | X-prolyl aminopeptidase 1 | NM_001167604.1 | 89.9% | 89.9% | 1_129del;1319_1320ins72 |
| 6 | human | 7511 | XPNPEP1 | X-prolyl aminopeptidase 1 | NM_001324133.2 | 89.6% | 84.5% | 1_129del;1871_1928del;2057_2085del |
| 7 | human | 7511 | XPNPEP1 | X-prolyl aminopeptidase 1 | NM_001324128.2 | 88.6% | 88.6% | 0_1ins213 |
| 8 | human | 7511 | XPNPEP1 | X-prolyl aminopeptidase 1 | XM_017016614.1 | 88.6% | 88.6% | 0_1ins213 |
| 9 | human | 7511 | XPNPEP1 | X-prolyl aminopeptidase 1 | XM_017016615.1 | 88.6% | 88.6% | 0_1ins213 |
| 10 | human | 7511 | XPNPEP1 | X-prolyl aminopeptidase 1 | XM_017016613.2 | 86.3% | 86.3% | 1_129del;504_505ins144 |
| 11 | human | 7511 | XPNPEP1 | X-prolyl aminopeptidase 1 | NM_001324131.2 | 85.8% | 85.8% | 0_1ins213;789_790ins51 |
| 12 | human | 7511 | XPNPEP1 | X-prolyl aminopeptidase 1 | XM_011540134.2 | 84.8% | 84.8% | 1_129del;1521_1522ins174 |
| 13 | human | 7511 | XPNPEP1 | X-prolyl aminopeptidase 1 | NM_001324134.2 | 78.9% | 78.9% | 0_1ins393 |
| 14 | human | 7511 | XPNPEP1 | X-prolyl aminopeptidase 1 | XM_024448156.1 | 78.9% | 78.9% | 0_1ins393 |
| 15 | mouse | 170750 | Xpnpep1 | X-prolyl aminopeptidase (am... | XM_011247159.2 | 88.1% | 95.8% | (many diffs) |
| 16 | mouse | 170750 | Xpnpep1 | X-prolyl aminopeptidase (am... | XM_011247160.1 | 88.1% | 95.8% | (many diffs) |
| 17 | mouse | 170750 | Xpnpep1 | X-prolyl aminopeptidase (am... | NM_133216.3 | 82.4% | 89.6% | (many diffs) |
| 18 | mouse | 170750 | Xpnpep1 | X-prolyl aminopeptidase (am... | XM_017318075.1 | 78.1% | 84.7% | (many diffs) |
| 19 | mouse | 170750 | Xpnpep1 | X-prolyl aminopeptidase (am... | XM_011247158.2 | 77.3% | 84.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1935
- ORF length:
- 1869
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC TCCAAAGGTG ACTTCAGAGC TGCTTCGGCA GCTGAGACAA GCCATGAGGA 121 ACTCTGAGTA TGTGACCGAA CCGATCCAGG CCTACATCAT CCCATCGGGA GATGCTCATC 181 AGAGTGAGTA TATTGCTCCA TGTGACTGTC GGCGGGCTTT TGTCTCTGGA TTCGATGGCT 241 CTGCGGGCAC AGCCATCATC ACAGAAGAGC ATGCAGCCAT GTGGACTGAC GGGCGCTACT 301 TTCTCCAGGC TGCCAAGCAA ATGGACAGCA ACTGGACACT TATGAAGATG GGTCTGAAGG 361 ACACACCAAC TCAGGAAGAC TGGCTGGTGA GTGTGCTTCC TGAAGGATCC AGGGTTGGTG 421 TGGACCCCTT GATCATTCCT ACAGATTATT GGAAGAAAAT GGCCAAAGTT CTGAGAAGTG 481 CCGGCCATCA CCTCATTCCT GTCAAGGAGA ACCTCGTTGA CAAAATCTGG ACAGACCGTC 541 CTGAGCGCCC TTGCAAGCCT CTCCTCACAC TGGGCCTGGA TTACACAGGC ATCTCCTGGA 601 AGGACAAGGT TGCAGACCTT CGGTTGAAAA TGGCTGAGAG GAACGTCATG TGGTTTGTGG 661 TCACTGCCTT GGATGAGATT GCGTGGCTAT TTAATCTCCG AGGATCAGAT GTGGAGCACA 721 ATCCAGTATT TTTCTCCTAC GCAATCATAG GACTAGAGAC GATCATGCTC TTCATTGATG 781 GTGACCGCAT AGACGCCCCC AGTGTGAAGG AGCACCTGCT TCTTGACTTG GGTCTGGAAG 841 CCGAATACAG GATCCAGGTG CATCCCTACA AGTCCATCCT GAGCGAGCTC AAGGCCCTGT 901 GTGCTGACCT CTCCCCAAGG GAGAAGGTGT GGGTCAGTGA CAAGGCCAGC TATGCTGTGA 961 GCGAGACCAT CCCCAAGGAC CACCGCTGCT GTATGCCTTA CACCCCCATC TGCATCGCCA 1021 AAGCTGTGAA GAATTCAGCT GAGTCAGAAG GCATGAGGCG GGCTCACATT AAAGATGCTG 1081 TTGCTCTCTG TGAACTCTTT AACTGGCTGG AGAAAGAGGT TCCCAAAGGT GGTGTGACAG 1141 AGATCTCAGC TGCTGACAAA GCTGAGGAGT TTCGCAGGCA ACAGGCAGAC TTTGTGGACC 1201 TGAGCTTCCC AACAATTTCC AGTACGGGAC CCAACGGCGC CATCATTCAC TACGCGCCAG 1261 TCCCTGAGAC GAATAGGACC TTGTCCCTGG ATGAGGTGTA CCTTATTGAC TCGGGTGCTC 1321 AATACAAGGA TGGCACCACA GATGTGACGC GGACAATGCA TTTTGGGACC CCTACAGCCT 1381 ACGAGAAGGA ATGCTTCACA TATGTCCTCA AGGGCCACAT AGCTGTGAGT GCAGCCGTTT 1441 TCCCGACTGG AACCAAAGGT CACCTTCTTG ACTCCTTTGC CCGTTCAGCT TTATGGGATT 1501 CAGGCCTAGA TTACTTGCAC GGGACTGGAC ATGGTGTTGG GTCTTTTTTG AATGTCCATG 1561 AGGGTCCTTG CGGCATCAGT TACAAAACAT TCTCTGATGA GCCCTTGGAG GCAGGCATGA 1621 TTGTCACTGA TGAGCCCGGG TACTATGAAG ATGGGGCTTT TGGAATTCGC ATTGAGAATG 1681 TTGTCCTTGT GGTTCCTGTG AAGACCAAGT ATAATTTTAA TAACCGGGGA AGCCTGACCT 1741 TTGAACCTCT AACATTGGTT CCAATTCAGA CCAAAATGAT AGATGTGGAT TCTCTTACAG 1801 ACAAAGAGTG CGACTGGCTC AACAATTACC ACCTGACCTG CAGGGATGTG ATTGGGAAGG 1861 AATTGCAGAA ACAGGGCCGC CAGGAAGCTC TCGAGTGGCT CATCAGAGAG ACGCAACCCA 1921 TCTCCAAACA GCATTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1981 tatcaatttg ttgcaacgaa c