Construct: ORF ccsbBroadEn_11241
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010861.1_s300c1, BRDN0000389565
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF232 (7775)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7775 | ZNF232 | zinc finger protein 232 | NM_001320953.1 | 100% | 100% | |
| 2 | human | 7775 | ZNF232 | zinc finger protein 232 | NM_001320954.1 | 100% | 100% | |
| 3 | human | 7775 | ZNF232 | zinc finger protein 232 | XM_024450918.1 | 97.8% | 97.8% | 543_544ins27 |
| 4 | human | 7775 | ZNF232 | zinc finger protein 232 | XM_011524006.3 | 94.9% | 94.9% | 0_1ins63 |
| 5 | human | 7775 | ZNF232 | zinc finger protein 232 | NM_014519.4 | 93.9% | 93.9% | 1_81del |
| 6 | human | 7775 | ZNF232 | zinc finger protein 232 | NM_001320952.1 | 91.8% | 91.8% | 1_81del;624_625ins27 |
| 7 | human | 7775 | ZNF232 | zinc finger protein 232 | XM_017025022.2 | 88.2% | 88.2% | 0_1ins63;269_270ins84 |
| 8 | human | 7775 | ZNF232 | zinc finger protein 232 | NM_001320955.1 | 87.6% | 87.6% | 1_81del;413_414ins84 |
| 9 | human | 7775 | ZNF232 | zinc finger protein 232 | XM_017025023.2 | 86% | 86% | 0_1ins63;269_270ins84;396_397ins27 |
| 10 | human | 7775 | ZNF232 | zinc finger protein 232 | XM_024450919.1 | 34.6% | 28.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1317
- ORF length:
- 1251
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TGTATCACTA ACAGCAGCTG AAACTCTGGC CCTTCAGGGT ACACAGGGAC 121 AAGAGAAGAT GATGATGATG GGACCAAAGG AAGAGGAACA GTCTTGTGAG TATGAGACCA 181 GGCTACCTGG GAACCACTCT ACCAGTCAAG AGATCTTCCG CCAACGCTTC AGGCATCTCC 241 GCTACCAGGA GACTCCTGGT CCCCGGGAGG CCTTGAGCCA ACTACGAGTA CTCTGCTGTG 301 AGTGGCTGAG GCCAGAGAAA CACACGAAGG AGCAGATCCT GGAGTTCCTG GTGCTGGAAC 361 AATTCTTGAC CATCCTGCCT GAGGAGCTCC AATCCTGGGT GCGGGGACAT CACCCTAAGA 421 GTGGAGAGGA GGCTGTGACT GTGCTGGAGG ATTTAGAGAA AGGACTTGAA CCAGAGCCGC 481 AGGTCCCAGG CCCTGCACAT GGACCTGCAC AGGAAGAGCC ATGGGAGAAG AAGGAATCTC 541 TGGGAGCAGC CCAGGAAGCA CTGAGCATCC AGCTCCAGCC TAAGGAGACC CAGCCTTTCC 601 CAAAGAGTGA ACAGGTATAT TTACATTTTC TGTCAGTTGT TACAGAAGAT GGCCCAGAGC 661 CCAAGGACAA AGGATCATTG CCACAACCAC CCATTACTGA AGTGGAATCA CAGGTGTTCT 721 CAGAAAAACT TGCTACTGAC ACCTCTACAT TTGAAGCTAC CTCTGAGGGT ACCTTAGAAC 781 TGCAGCAGAG AAATCCCAAA GCGGAGAGAC TGAGGTGGTC CCCTGCCCAG GAGGAAAGTT 841 TCAGGCAGAT GGTTGTCATC CATAAGGAAA TTCCCACAGG GAAGAAAGAC CATGAATGTA 901 GTGAATGTGG TAAAACCTTC ATTTATAACT CACATCTTGT TGTCCACCAG AGAGTTCATT 961 CTGGAGAGAA ACCCTATAAG TGTAGTGACT GTGGGAAAAC TTTCAAACAG AGCTCAAACC 1021 TCGGTCAGCA TCAGAGAATT CATACAGGAG AGAAACCCTT CGAATGTAAT GAATGTGGGA 1081 AGGCCTTCAG ATGGGGTGCT CATCTTGTTC AGCATCAGAG GATTCACTCA GGAGAGAAGC 1141 CCTATGAGTG TAATGAGTGT GGGAAGGCCT TTAGTCAAAG CTCATATCTA AGTCAGCATC 1201 GGAGAATTCA CAGTGGAGAG AAACCTTTTA TATGTAAAGA ATGTGGGAAA GCTTATGGAT 1261 GGTGCTCAGA GCTCATTAGA CATCGGAGAG TTCATGCCAG AAAAGAGCCT TCCCATTGCC 1321 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1381 aac