Construct: ORF ccsbBroadEn_11264
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016204.1_s300c1, BRDN0000387257
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NAA10 (8260)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8260 | NAA10 | N(alpha)-acetyltransferase ... | NM_001256119.2 | 59.5% | 53.6% | 341delG;395_660del |
| 2 | human | 8260 | NAA10 | N(alpha)-acetyltransferase ... | NM_003491.4 | 55.7% | 48.9% | 340_385del;440_705del |
| 3 | human | 8260 | NAA10 | N(alpha)-acetyltransferase ... | NM_001256120.2 | 53.1% | 46.3% | 161_162insGTATGTCCTGGCCAAAAT;322_367del;422_687del |
| 4 | human | 84779 | NAA11 | N(alpha)-acetyltransferase ... | NM_032693.3 | 50% | 48% | (many diffs) |
| 5 | human | 84779 | NAA11 | N(alpha)-acetyltransferase ... | XM_017008777.1 | 50% | 48% | (many diffs) |
| 6 | human | 84779 | NAA11 | N(alpha)-acetyltransferase ... | XM_017008778.2 | 50% | 48% | (many diffs) |
| 7 | human | 84779 | NAA11 | N(alpha)-acetyltransferase ... | XM_017008779.1 | 50% | 48% | (many diffs) |
| 8 | human | 84779 | NAA11 | N(alpha)-acetyltransferase ... | XR_001741340.1 | 7.9% | (many diffs) | |
| 9 | human | 84779 | NAA11 | N(alpha)-acetyltransferase ... | XR_001741339.1 | 7.9% | (many diffs) | |
| 10 | mouse | 56292 | Naa10 | N(alpha)-acetyltransferase ... | XM_011247649.1 | 80.7% | 85.8% | (many diffs) |
| 11 | mouse | 56292 | Naa10 | N(alpha)-acetyltransferase ... | NM_001310538.1 | 71.5% | 67.6% | (many diffs) |
| 12 | mouse | 56292 | Naa10 | N(alpha)-acetyltransferase ... | XM_011247647.2 | 57.9% | 58.3% | (many diffs) |
| 13 | mouse | 56292 | Naa10 | N(alpha)-acetyltransferase ... | NM_001177965.1 | 54% | 51.1% | (many diffs) |
| 14 | mouse | 56292 | Naa10 | N(alpha)-acetyltransferase ... | NM_019870.3 | 51.7% | 48.9% | (many diffs) |
| 15 | mouse | 97243 | Naa11 | N(alpha)-acetyltransferase ... | NM_001033191.2 | 51.3% | 51.3% | (many diffs) |
| 16 | mouse | 56292 | Naa10 | N(alpha)-acetyltransferase ... | XM_017318576.1 | 50.9% | 49.1% | (many diffs) |
| 17 | mouse | 56292 | Naa10 | N(alpha)-acetyltransferase ... | XM_017318574.1 | 41.3% | 40% | (many diffs) |
| 18 | mouse | 56292 | Naa10 | N(alpha)-acetyltransferase ... | XM_017318575.1 | 40% | 38.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 459
- ORF length:
- 393
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CATCCGCAAT GCGAGGCCAG AGGACCTAAT GAACATGCAG CACTGCAACC 121 TCCTCTGCCT GCCCGAGAAC TACCAGATGA AATACTACTT CTACCATGGC CTTTCCTGGC 181 CCCAGCTCTC TTACATTGCT GAGGACGAGA ATGGGAAGAT TGTGGGGTAT GTCCTGGCCA 241 AAATGGAAGA GGACCCAGAT GATGTGCCCC ATGGACATAT CACCTCATTG GCTGTGAAGC 301 GTTCCCACCG GCGCCTCGGT CTGGCTCAGA AACTGATGGA CCAGGCCTCT CGAGCCATGA 361 TAGAGAACTT CAATGCCAAA TATGTCTCCC TGCATGTCAG GAAGAGATCA GTGAAGTGGA 421 GCCCAAATAC TATGCAGATG GGGAGGACGC CTATGCCATG CCCAACTTTC TTGTACAAAG 481 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac