Construct: ORF ccsbBroadEn_11275
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003714.1_s300c1, BRDN0000456732
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TTF2 (8458)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8458 | TTF2 | transcription termination f... | XR_002957812.1 | 60% | (many diffs) | |
| 2 | human | 8458 | TTF2 | transcription termination f... | NM_003594.4 | 56.2% | 54.3% | (many diffs) |
| 3 | human | 8458 | TTF2 | transcription termination f... | XM_017002555.2 | 56.2% | 54.3% | (many diffs) |
| 4 | human | 8458 | TTF2 | transcription termination f... | XM_005271277.4 | 56.1% | 54.2% | (many diffs) |
| 5 | human | 8458 | TTF2 | transcription termination f... | XM_011542303.3 | 55.9% | 54% | (many diffs) |
| 6 | human | 8458 | TTF2 | transcription termination f... | XM_017002553.2 | 55.2% | 53.4% | (many diffs) |
| 7 | human | 8458 | TTF2 | transcription termination f... | XM_017002554.2 | 55.1% | 53.3% | (many diffs) |
| 8 | human | 8458 | TTF2 | transcription termination f... | XM_017002550.2 | 54.9% | 53.1% | (many diffs) |
| 9 | human | 8458 | TTF2 | transcription termination f... | XM_017002551.2 | 54.9% | 53.1% | (many diffs) |
| 10 | human | 8458 | TTF2 | transcription termination f... | XM_017002552.2 | 54.8% | 53% | (many diffs) |
| 11 | human | 8458 | TTF2 | transcription termination f... | XR_001737490.2 | 20.7% | (many diffs) | |
| 12 | human | 8458 | TTF2 | transcription termination f... | XR_001737489.2 | 20.5% | (many diffs) | |
| 13 | human | 8458 | TTF2 | transcription termination f... | XR_002957811.1 | 19.4% | (many diffs) | |
| 14 | human | 8458 | TTF2 | transcription termination f... | XR_002957810.1 | 19.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2094
- ORF length:
- 2028
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA AGAAGTTAGG TGTCCAGAGC ACGGGACTTT CTGCTTTCTT AAGACCGGCG 121 TCCGCGATGG CCCGAATAAA GGAAAGAGCT TCTACGTGTG CCGGGCAGAC ACGTGCAGCT 181 TCGTGCGGGC CACCGACATT CCTGTTTCCC ATTGCTTATT GCATGAGGAC TTTGTGGTAG 241 AGCTTCAGGG TTTGCTTCTG CCACAGGACA AGAAAGAATA CAGATTGTTC TTCCGATGCA 301 TTAGAAGTAA GGCAGAGGGG AAACGCTGGT GTGGAAGTAT TCCATGGCAG GATCCTGATT 361 CCAAAGAACA TTCTGTATCC AATAAGTCTC AGCATGCATC TGAGACATTT CATCATTCTT 421 CCAACTGGCT GAGAAATCCA TTCAAGGTAC TTGACAAGAA TCAAGAACCA GCTCTCTGGA 481 AACAGCTCAT CAAAGGTGAA GGTGAGGAAA AGAAGGCTGA TAAGAAGCAA AGAGAAAAGG 541 GAGATCAGCT TTTCGATCAA AAGAAAGAAC AGAAGCCTGA AATGATGGAG AAAGACCTCT 601 CATCTGGCCT GGTACCAAAG AAAAAACAAT CTGTAGTTCA AGAGAAGAAG CAAGAAGAGG 661 GAGCAGAGAT TCAGTGTGAG GCAGAGACTG GAGGCACACA CAAAAGAGAC TTTTCTGAAA 721 TTAAATCTCA ACAGTGCCAA GGTAATGAGC TTACAAGACC ATCTGCATCT TCTCAGGAGA 781 AATCAAGTGG TAAGAGTCAA GATGTCCAAA GAGAATCAGA ACCTCTGAGA GAAAAGGTTA 841 CCCAGCTTTT GCCTCAAAAT GTTCACAGTC ACAACTCAAT AAGCAAGCCC CAGAAAGGGG 901 GACCCCTCAA CAAGGAGTAC ACGAACTGGG AGGCTAAAGA AACAAAGGCA AAGGATGGCC 961 CTAGCATACA GGCCACCCAG AAAAGCCTGC CTCAGGGGCA TTTCCAAGAG CGGCCGGAGA 1021 CCCACAGTGT GCCTGCTCCT GGAGGACCAG CGGCTCAGGC TGCACCAGCA GCACCAGGGC 1081 TTTCCCTGGG TGAGGGCCGT GAAGCTGCCA CAAGCAGTGA CGACGAGGAG GAAGATGATG 1141 TTGTTTTTGT TTCCTCTAAG CCTGGGAGCC CCCTACTCTT TGACTCGACT CTGGACTTAG 1201 AGACGAAGGA AAACCTCCAA TTCCCTGATC GAAGTGTGCA AAGAAAGGTG TCTCCTGCCT 1261 CAGGTGTTTC CAAGAAGGTA GAACCCTCAG ACCCAGTAGC CCGGCGTGTC TACCTTACAA 1321 CACAACTGAA ACAAAAGAAG AGCACACTGG CATCAGTGAA CATCCAGGCT CTTCCAGACA 1381 AGGGTCAGAA GTTGATCAAA CAAATCCAGG AGCTGGAGGA AGTACTCAGT GGTCTTACCC 1441 TTTCCCCAGA GCAAGGAACT AATGAGAAGA GTAACAGTCA AGTACCACAG CAGAGTCACT 1501 TCACCAAAAC TACCACTGGC CCTCCCCACC TGGTGCCTCC CCAACCCCTT CCTCGTCGTG 1561 GTACCCAACC TGTGGGTTCT CTAGAACTAA AGTCTGCCTG CCAGGTGACT GCTGGAGGAT 1621 CCAGTCAGTG CTATCGAGGC CATACAAACC AAGATCACGT TCATGCAGTG TGGAAAATCA 1681 CAAGTGAAGC CATCGGTCAA CTGCATCGCT CACTTGAGTC ATGTCCTGGT GAGACGGTTG 1741 TGGCAGAAGA TCCCGCCGGG CTGAAGGTCC CTTTGCTACT ACACCAGAAG CAGGCATTGG 1801 CTTGGTTACT ATGGCGAGAA AGTCAGAAGC CACAAGGAGG AATTCTGGCA GATGATATGG 1861 GCTTAGGAAA AACCCTGACA ATGATTGCGC TCATCCTGAC CCAGAAGAAT CAAGAGAAAA 1921 AGGAAGAAAA GGAGAAAAGC ACAGCTTTGA CGTGGCTCTC CAAAGATGGT AGACAGAAGT 1981 GCCTTAATAG CCTGCCATTC CCTACGTCAT TTGAGCCACC CAAGAGGGGA ACGTCTTCAG 2041 CTAAAAAAGG ACACCTTTGG TCATATTTAA TTACTCTACT GGAAAACCAG TATTACCCAA 2101 CTTTCTTGTA CAAAGTTGGc attataagaa agcattgctt atcaatttgt tgcaacgaac