Construct: ORF ccsbBroadEn_11283
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007028.1_s300c1, BRDN0000396268
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KLF7 (8609)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8609 | KLF7 | Kruppel like factor 7 | NM_001270942.1 | 100% | 100% | |
| 2 | human | 8609 | KLF7 | Kruppel like factor 7 | XM_017005164.2 | 100% | 100% | |
| 3 | human | 8609 | KLF7 | Kruppel like factor 7 | XM_011512075.2 | 76.1% | 64.9% | (many diffs) |
| 4 | human | 8609 | KLF7 | Kruppel like factor 7 | XM_017005163.2 | 76.1% | 64.9% | (many diffs) |
| 5 | human | 8609 | KLF7 | Kruppel like factor 7 | NM_003709.4 | 76.1% | 58.1% | 530_731del;893_906del |
| 6 | human | 8609 | KLF7 | Kruppel like factor 7 | XM_017005161.1 | 76.1% | 58.1% | 530_731del;893_906del |
| 7 | human | 8609 | KLF7 | Kruppel like factor 7 | XM_005246926.3 | 75.9% | 57.9% | 532_736del;896_909del |
| 8 | human | 8609 | KLF7 | Kruppel like factor 7 | XM_006712815.3 | 75.9% | 57.9% | 532_736del;896_909del |
| 9 | human | 8609 | KLF7 | Kruppel like factor 7 | XM_011512072.2 | 75.9% | 57.9% | 532_736del;896_909del |
| 10 | human | 8609 | KLF7 | Kruppel like factor 7 | NM_001270944.1 | 66.1% | 47.7% | (many diffs) |
| 11 | human | 8609 | KLF7 | Kruppel like factor 7 | XM_017005162.1 | 65.8% | 47.6% | (many diffs) |
| 12 | human | 8609 | KLF7 | Kruppel like factor 7 | XM_011512073.2 | 65.4% | 47.6% | (many diffs) |
| 13 | human | 8609 | KLF7 | Kruppel like factor 7 | NM_001270943.2 | 65% | 47.4% | (many diffs) |
| 14 | human | 8609 | KLF7 | Kruppel like factor 7 | XM_011512074.2 | 64.8% | 47.3% | (many diffs) |
| 15 | human | 8609 | KLF7 | Kruppel like factor 7 | XM_024453196.1 | 64.8% | 47.3% | (many diffs) |
| 16 | human | 8609 | KLF7 | Kruppel like factor 7 | XR_923051.2 | 36% | (many diffs) | |
| 17 | human | 8609 | KLF7 | Kruppel like factor 7 | XR_001739009.2 | 10% | (many diffs) | |
| 18 | mouse | 93691 | Klf7 | Kruppel-like factor 7 (ubiq... | NM_033563.2 | 71.6% | 56.9% | (many diffs) |
| 19 | mouse | 93691 | Klf7 | Kruppel-like factor 7 (ubiq... | XM_006496354.3 | 71.6% | 56.9% | (many diffs) |
| 20 | mouse | 93691 | Klf7 | Kruppel-like factor 7 (ubiq... | XM_006496351.3 | 71.4% | 56.7% | (many diffs) |
| 21 | mouse | 93691 | Klf7 | Kruppel-like factor 7 (ubiq... | XM_006496352.3 | 71.4% | 56.7% | (many diffs) |
| 22 | mouse | 93691 | Klf7 | Kruppel-like factor 7 (ubiq... | XM_006496353.2 | 71.4% | 56.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 756
- ORF length:
- 690
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CGTGTTGGCT AGTTATAGTA TATTCCAGGA GCTACAACTT GTCCACGACA 121 CCGGCTACTT CTCAGCTTTA CCATCCCTGG AGGAGACCTG GCAGCAGACA TGCCTTGAAT 181 TGGAACGCTA CCTACAGACG GAGCCCCGGA GGATCTCAGA GACCTTTGGT GAGGACTTGG 241 ACTGTTTCCT CCACGCTTCC CCTCCCCCGT GCATTGAGGA AAGCTTCCGT CGCTTAGACC 301 CCCTGCTGCT CCCCGTGGAA GCGGCCATCT GTGAGAAGAG CTCGGCAGTG GACATCTTGC 361 TCTCTCGGGA CAAGTTGCTA TCTGAGACCT GCCTCAGCCT CCAGCCGGCC AGCTCTTCTC 421 TAGACAGCTA CACAGCCGTC AACCAGGCCC AGCTCAACGC AGTGACCTCA TTAACGCCCC 481 CATCGTCCCC TGAGCTCAGC CGCCATCTGG TCAAAACCTC ACAAACTCTC TCTGCCGTGG 541 ATGGCACGGT GACGTTGAAA CTGGTGGCCA AGAAGGCTGC TCTCAGCTCC GTAAAGGTGA 601 GAAGCCTTAT AAGTGCTCAT GGGAGGGATG TGAGTGGCGT TTTGCACGAA GCGATGAGCT 661 CACGAGGCAC TACAGGAAAC ACACAGGTGC AAAGCCCTTC AAATGCAACC ACTGCGACAG 721 GTGTTTTTCC AGGTCTGACC ATCTTGCCCT CCACATGCCC AACTTTCTTG TACAAAGTtg 781 gcattataag aaagcattgc ttatcaattt gttgcaacga ac