Construct: ORF ccsbBroadEn_11311

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016038.1_s300c1, BRDN0000388637
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NRP2 (8828)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8828 NRP2 neuropilin 2 NM_201264.1 16.5% 14.8% (many diffs)
2 human 8828 NRP2 neuropilin 2 XR_923057.3 12.3% (many diffs)
3 human 8828 NRP2 neuropilin 2 XR_923056.3 12% (many diffs)
4 human 8828 NRP2 neuropilin 2 XM_017005188.2 10.8% 9.7% (many diffs)
5 human 8828 NRP2 neuropilin 2 XM_017005187.2 10.8% 9.7% (many diffs)
6 human 8828 NRP2 neuropilin 2 NM_201267.2 10.2% 9.2% (many diffs)
7 human 8828 NRP2 neuropilin 2 NM_018534.4 10.1% 9.1% (many diffs)
8 human 8828 NRP2 neuropilin 2 NM_201279.2 10.1% 9.1% (many diffs)
9 human 8828 NRP2 neuropilin 2 NM_003872.3 9.9% 8.9% (many diffs)
10 human 8828 NRP2 neuropilin 2 NM_201266.2 9.9% 8.9% (many diffs)
11 human 8828 NRP2 neuropilin 2 XR_923055.3 4.9% (many diffs)
12 mouse 18187 Nrp2 neuropilin 2 NM_001077407.1 9.8% 8.7% (many diffs)
13 mouse 18187 Nrp2 neuropilin 2 NM_001077406.1 9.7% 8.7% (many diffs)
14 mouse 18187 Nrp2 neuropilin 2 NM_001077405.1 9.7% 8.6% (many diffs)
15 mouse 18187 Nrp2 neuropilin 2 NM_010939.2 9.6% 8.6% (many diffs)
16 mouse 18187 Nrp2 neuropilin 2 NM_001077404.1 9.5% 8.5% (many diffs)
17 mouse 18187 Nrp2 neuropilin 2 NM_001077403.1 9.5% 8.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
363
ORF length:
297
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA TATGTTTCCT CTCACCTGGG TTTTCTTAGC CCTCTACTTT TCAAGACACC
121AAGTGAGAGG CCAACCAGAC CCACCGTGCG GAGGTCGTTT GAATTCCAAA GATGCTGGCT
181ATATCACCTC TCCCGGTTAC CCCCAGGACT ACCCCTCCCA CCAGAACTGC GAGTGGATTG
241TTTACGCCCC CGAACCCAAC CAGAAGATTG TCCTCAACTT CAACCCTCAC TTTGAAATCG
301AGAAGCACGA CTGCAACTTG CTGTCTGCTT GGAAAATTTC ACTCACAAGC CGCAGCTTTG
361CCTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
421gcaacgaac

Download FASTA (ORF) (Full)