Transcript: Human XR_923055.3

PREDICTED: Homo sapiens neuropilin 2 (NRP2), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NRP2 (8828)
Length:
5639
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_923055.3
NBCI Gene record:
NRP2 (8828)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_923055.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000028976 CCGGATTGCTAATGAACAGAT pLKO.1 906 3UTR 100% 4.950 6.930 N Nrp2 n/a
2 TRCN0000063309 CGACTGCAAGTATGACTTTAT pLKO.1 291 3UTR 100% 13.200 10.560 N NRP2 n/a
3 TRCN0000063310 GCGCAAGTTCAAAGTCTCCTA pLKO.1 1611 3UTR 100% 2.640 2.112 N NRP2 n/a
4 TRCN0000063312 CCTCAACTTCAACCCTCACTT pLKO.1 255 3UTR 100% 4.950 3.465 N NRP2 n/a
5 TRCN0000063308 GCCATTGATGACATTCGGATA pLKO.1 2138 3UTR 100% 4.050 2.835 N NRP2 n/a
6 TRCN0000028974 CCTCACTTTGAAATCGAGAAA pLKO.1 268 3UTR 100% 4.950 3.465 N Nrp2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_923055.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02025 pDONR223 100% 42.5% None (many diffs) n/a
2 ccsbBroad304_02025 pLX_304 0% 42.5% V5 (many diffs) n/a
3 TRCN0000470036 AGGTAGGCTCTCAACGCTGCCTCA pLX_317 16.7% 42.5% V5 (many diffs) n/a
4 ccsbBroadEn_11311 pDONR223 100% 4.9% None (many diffs) n/a
5 ccsbBroad304_11311 pLX_304 0% 4.9% V5 (many diffs) n/a
6 TRCN0000469807 CGAGGCGTACGCATAGCAACATTA pLX_317 100% 4.9% V5 (many diffs) n/a
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