Construct: ORF ccsbBroadEn_11330
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002385.1_s300c1, BRDN0000391742
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PRC1 (9055)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9055 | PRC1 | protein regulator of cytoki... | NM_199413.3 | 94.8% | 94.8% | (many diffs) |
| 2 | human | 9055 | PRC1 | protein regulator of cytoki... | NM_003981.4 | 92.7% | 92.7% | (many diffs) |
| 3 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_011522188.3 | 91.1% | 89.4% | (many diffs) |
| 4 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_011522187.2 | 89.5% | 89.4% | (many diffs) |
| 5 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_017022713.2 | 88.7% | 88.7% | (many diffs) |
| 6 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_005254987.3 | 88.2% | 87.2% | (many diffs) |
| 7 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_006720759.2 | 87.4% | 87.4% | (many diffs) |
| 8 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_011522191.3 | 87.4% | 87.4% | (many diffs) |
| 9 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_006720760.2 | 87.4% | 87.2% | (many diffs) |
| 10 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_017022712.2 | 86.7% | 86.7% | (many diffs) |
| 11 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_017022716.2 | 85.5% | 85.6% | (many diffs) |
| 12 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_017022715.2 | 84.3% | 84.3% | (many diffs) |
| 13 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_011522189.2 | 83.6% | 83.4% | (many diffs) |
| 14 | human | 9055 | PRC1 | protein regulator of cytoki... | NM_001267580.2 | 81.5% | 80.5% | (many diffs) |
| 15 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_017022714.2 | 81.2% | 81% | (many diffs) |
| 16 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_011522190.3 | 80.5% | 80.4% | (many diffs) |
| 17 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_017022717.1 | 79.7% | 78.7% | (many diffs) |
| 18 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_011522192.2 | 72.5% | 72.3% | (many diffs) |
| 19 | mouse | 233406 | Prc1 | protein regulator of cytoki... | NM_145150.3 | 81.1% | 79.3% | (many diffs) |
| 20 | mouse | 233406 | Prc1 | protein regulator of cytoki... | NM_001285997.1 | 80.7% | 79.2% | (many diffs) |
| 21 | mouse | 233406 | Prc1 | protein regulator of cytoki... | XM_006540856.3 | 79.3% | 77.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1794
- ORF length:
- 1728
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG GAGAAGTGAG GTGCTGGCGG AGGAGTCCAT AGTATGTCTG CAGAAAGCCC 121 TAAATCACCT TCGGGAAATA TGGGAGCTAA TTGGGATTCC AGAGGACCAG CGGTTACAAA 181 GAACTGAGGT GGTAAAGAAG CATATCAAGG AACTCCTGGA TATGATGATT GCTGAAGAGG 241 AAAGCCTGAA GGAAAGACTC ATCAAAAGCA TATCCGTCTG TCAGAAAGAG CTGAACACTC 301 TGTGCAGCGA GTTACATGTT GAGCCATTTC AGGAAGAAGG AGAGACAACC ATCTTGCAAC 361 TAGAAAAAGA TTTGCGCACC CAAGTGGAAT TGATGCGAAA ACAGAAAAAG GAGAGAAAAC 421 AGGAACTGAA GCTACTTCAA GAGCAAGATC AAGAACTGTG CGAAATTCTT TGTATGCCCC 481 ACTATGATAT TGACAGTGCC TCAGTGCCCA GCTTAGAAGA ACTGAACCAG TTCAGGCAAC 541 ATGTGACAAC TTTGAGGGAA ACAAAGGCTT CTAGGCGTGA GGAGTTTGTC AGTATAAAGA 601 GACAGATCAT ACTGTGTATG GAAGAATTAG ACCACACCCC AGACACAAGC TTTGAAAGAG 661 ATGTGGTGTG TGAAGACGAA GATGCCTTTT GTTTGTCTTT GGAGAATATT GCAACACTAC 721 AAAAGTTGCT ACGGCAGCTG GAAATGCAGA AATCACAAAA TGAAGCAGTG TGTGAGGGGC 781 TGCGTACTCA AATCCGAGAG CTCTGGGACA GGTTGCAAAT ACCTGAAGAA GAAAGAGAAG 841 CTGTGGCCAC CATTATGTCT GGGTCAAAGG CCAAGGTCCG GAAAGCGCTG CAATTAGAAG 901 TGGATCGGTT GGAAGAACTG AAAATGCAAA ACATGAAGAA AGTGATTGAG GCAATTCGAG 961 TGGAGCTGGT TCAGTACTGG GACCAGTGCT TTTATAGCCA GGAGCAGAGA CAAGCTTTTG 1021 CCCCTTTCTG TGCTGAGGAC TACACAGAAA GTCTGCTCCA GCTCCACGAT GCTGAGATTG 1081 TGCGGTTAAA AAACTACTAT GAAGTTCACA AGGAACTCTT TGAAGGTGTC CAGAAGTGGG 1141 AAGAAACCTG GAGGCTTTTC TTAGAGTTTG AGAGAAAAGC TTCAGATCCA AATCGATTTA 1201 CAAACCGAGG AGGAAATCTT CTAAAAGAAG AAAAACAACG AGCCAAGCTC CAGAAATTCA 1261 TGGAGTATGT GGCAGAACAA TGGGAGATGC ATCGATTGGA GAAAGAGAGA GCCAAGCAGG 1321 AAAGACAACT GAAGAACAAA AAACAGACAG AGACAGAGAT GCTGTATGGC AGCGCTCCTC 1381 GAACACCTAG CAAGCGGCGA GGACTGGCTC CCAATACACC GGGCAAAGCA CGTAAGCTGA 1441 ACACTACCAC CATGTCCAAT GCTACGGCCA ATAGTAGCAT TCGGCCTATC TTTGGAGGGA 1501 CAGTCTACCA CTCCCCCGTG TCTCGACTTC CTCCTTCTGG CAGCAAGCCA GTCGCTGCTT 1561 CCACCTGTTC AGGGAAGAAA ACACCCCGTA CTGGCAGGCA TGGAGCCAAC AAGGAGAACC 1621 TGGAGCTCAA CGGCAGCATC CTGAGTGGTG GGTACCCTGG CTCGGCCCCC CTCCAGCGCA 1681 ACTTCAGCAT TAATTCTGTT GCCAGCACCT ATTCTGAGTT TGCGCGAGAA CTTTCAAAGG 1741 CTTCCAAATC TGATGCTACT TCTGGAATCC TCAATTCAAC CAACATCCAG TCCTGCCCAA 1801 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac