Construct: ORF ccsbBroadEn_11335
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015096.1_s300c1, BRDN0000387293
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LATS1 (9113)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9113 | LATS1 | large tumor suppressor kina... | XM_017011482.1 | 19% | 17.4% | (many diffs) |
| 2 | human | 9113 | LATS1 | large tumor suppressor kina... | NM_001270519.1 | 18.5% | 17% | (many diffs) |
| 3 | human | 9113 | LATS1 | large tumor suppressor kina... | XM_006715603.3 | 14.4% | 13.2% | (many diffs) |
| 4 | human | 9113 | LATS1 | large tumor suppressor kina... | XM_017011479.1 | 12.9% | 11.8% | (many diffs) |
| 5 | human | 9113 | LATS1 | large tumor suppressor kina... | XM_011536252.2 | 12.8% | 11.7% | (many diffs) |
| 6 | human | 9113 | LATS1 | large tumor suppressor kina... | XM_017011477.1 | 12.4% | 11.3% | (many diffs) |
| 7 | human | 9113 | LATS1 | large tumor suppressor kina... | NM_004690.4 | 11.3% | 10.4% | (many diffs) |
| 8 | human | 9113 | LATS1 | large tumor suppressor kina... | XM_017011474.1 | 11% | 10.1% | (many diffs) |
| 9 | human | 9113 | LATS1 | large tumor suppressor kina... | XM_024446583.1 | 11% | 10.1% | (many diffs) |
| 10 | human | 9113 | LATS1 | large tumor suppressor kina... | NR_073033.1 | 5.4% | 1_359del;765_7439del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 471
- ORF length:
- 405
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GAGGAGTGAA AAGCCAGAAG GATATAGACA AATGAGGCCT AAGACCTTTC 121 CTGCCAGTAA CTATACTGTC AGTAGCCGGC AAATGTTACA AGAAATTCGG GAATCCCTTA 181 GGAATTTATC TAAACCATCT GATGCTGCTA AGGCTGAGCA TAACATGAGT AAAATGTCAA 241 CCGAAGATCC TCGACAAGTC AGAAATCCAC CCAAATTTGG GACGCATCAT AAAGCCTTGC 301 AGGAAATTCG AAACTCTCTG CTTCCATTTG CAAATGAAAC AAATTCTTCT CGGAGTACTT 361 CAGAAGTTAA TCCACAAATG CTTCAAGACT TGCAAGCTGC TGGATTTGAT GAGGAGGATC 421 ATCTGTCAGT AGCCTGTTCA CCCATTAGTC TTACTAAGCC ATTTCTCATT TACCCAACTT 481 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac