Construct: ORF ccsbBroadEn_11345
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017085.1_s300c1, BRDN0000395485
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARHGEF2 (9181)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | NM_004723.3 | 99.8% | 99.8% | 497_498insAGC |
| 2 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | NM_001350110.1 | 98.9% | 98.9% | 2804_2833del |
| 3 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | NM_001350111.1 | 98.9% | 98.9% | 2804_2833del |
| 4 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_005245594.3 | 98.9% | 98.9% | 2804_2833del |
| 5 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_017002797.2 | 98.8% | 98.8% | 497_498insAGC;2801_2830del |
| 6 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_006711622.4 | 97.9% | 97.9% | 1_30del;2834_2863del |
| 7 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | NM_001350112.1 | 97.8% | 97.8% | 1_30del;527_528insAGC;2831_2860del |
| 8 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_005245590.4 | 97.7% | 97.7% | 1_36del;2840_2869del |
| 9 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_005245591.4 | 97.7% | 97.7% | 1_36del;2840_2869del |
| 10 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | NM_001162383.2 | 97.2% | 97.2% | 1_81del |
| 11 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | NM_001162384.1 | 97.1% | 97.1% | 1_81del;578_579insAGC |
| 12 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_005245589.5 | 97% | 97% | 1_57del;2861_2890del |
| 13 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_017002795.2 | 96.9% | 96.9% | 1_57del;554_555insAGC;2858_2887del |
| 14 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_005245587.3 | 96.2% | 96.2% | 1_81del;2885_2914del |
| 15 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_005245588.3 | 96.1% | 96.1% | 1_81del;578_579insAGC;2882_2911del |
| 16 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_006711623.4 | 93.9% | 91.8% | 0_1ins79;48_49ins68;2657_2686del |
| 17 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_006711624.4 | 93.9% | 91.8% | 0_1ins79;48_49ins68;2657_2686del |
| 18 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_006711625.4 | 93.9% | 91.8% | 0_1ins79;48_49ins68;2657_2686del |
| 19 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_006711626.3 | 93.9% | 91.8% | 0_1ins79;48_49ins68;2657_2686del |
| 20 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_017002798.2 | 93.9% | 91.8% | 0_1ins79;48_49ins68;2657_2686del |
| 21 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_024450815.1 | 93.9% | 91.8% | 0_1ins79;48_49ins68;2657_2686del |
| 22 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_024450823.1 | 93.8% | 91.7% | (many diffs) |
| 23 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_011510137.3 | 84.9% | 84.9% | 1_510del |
| 24 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_017002794.2 | 84.8% | 84.8% | 1_510del;1007_1008insAGC |
| 25 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_011510139.3 | 84.1% | 84.1% | 1_510del;3314_3343del |
| 26 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_011510136.3 | 84.1% | 84.1% | 1_510del;1007_1008insAGC;3311_3340del |
| 27 | human | 9181 | ARHGEF2 | Rho/Rac guanine nucleotide ... | XM_011510143.3 | 83.2% | 83.2% | 0_1ins456;2348_2377del |
| 28 | mouse | 16800 | Arhgef2 | rho/rac guanine nucleotide ... | NM_001198912.1 | 84.6% | 88.5% | (many diffs) |
| 29 | mouse | 16800 | Arhgef2 | rho/rac guanine nucleotide ... | XM_006501067.3 | 84.6% | 88.5% | (many diffs) |
| 30 | mouse | 16800 | Arhgef2 | rho/rac guanine nucleotide ... | NM_001198913.1 | 84.4% | 88.3% | (many diffs) |
| 31 | mouse | 16800 | Arhgef2 | rho/rac guanine nucleotide ... | XM_006501066.1 | 83.6% | 87.4% | (many diffs) |
| 32 | mouse | 16800 | Arhgef2 | rho/rac guanine nucleotide ... | NM_001198911.1 | 83.4% | 87.2% | (many diffs) |
| 33 | mouse | 16800 | Arhgef2 | rho/rac guanine nucleotide ... | XM_006501064.3 | 83% | 86.8% | (many diffs) |
| 34 | mouse | 16800 | Arhgef2 | rho/rac guanine nucleotide ... | XM_006501065.3 | 82.8% | 86.6% | (many diffs) |
| 35 | mouse | 16800 | Arhgef2 | rho/rac guanine nucleotide ... | NM_008487.3 | 82.3% | 86.1% | (many diffs) |
| 36 | mouse | 16800 | Arhgef2 | rho/rac guanine nucleotide ... | XM_006501061.2 | 78.7% | 82.3% | (many diffs) |
| 37 | mouse | 16800 | Arhgef2 | rho/rac guanine nucleotide ... | XM_006501060.3 | 72.6% | 75.8% | (many diffs) |
| 38 | mouse | 16800 | Arhgef2 | rho/rac guanine nucleotide ... | XM_006501058.2 | 68.5% | 71.6% | (many diffs) |
| 39 | mouse | 16800 | Arhgef2 | rho/rac guanine nucleotide ... | XM_006501059.2 | 68.3% | 71.4% | (many diffs) |
| 40 | mouse | 16800 | Arhgef2 | rho/rac guanine nucleotide ... | XM_011240027.2 | 62.8% | 65.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2943
- ORF length:
- 2877
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAACG 61 TTGGCATGAA GGAAGCCAAG GATGCCCGCT ATACCAATGG GCACCTCTTC ACCACCATTT 121 CAGTTTCAGG CATGACCATG TGCTATGCCT GTAACAAGAG CATCACAGCC AAGGAAGCCC 181 TCATCTGCCC AACCTGCAAT GTGACTATCC ACAACCGCTG TAAAGACACC CTCGCCAACT 241 GTACCAAGGT CAAGCAGAAG CAACAGAAAG CGGCCCTGCT GAAGAACAAC ACCGCCTTGC 301 AGTCCGTTTC TCTTCGAAGT AAGACAACCA TCCGGGAGCG GCCAAGCTCG GCCATCTACC 361 CCTCCGACAG CTTCCGGCAG TCCCTCCTGG GCTCCCGCCG TGGCCGCTCC TCCTTGTCTT 421 TAGCCAAGAG TGTTTCTACC ACCAACATTG CTGGACATTT CAATGATGAG TCTCCCCTGG 481 GGCTGCGCCG GATCCTCTCA CAGTCCACAG ACTCCCTCAA CATGCGGAAC CGAACCCTAT 541 CCGTGGAATC CCTCATTGAC GAAGCAGAGG TAATCTACAG TGAGCTGATG AGTGACTTTG 601 AGATGGATGA GAAGGACTTT GCAGCTGACT CTTGGAGTCT TGCTGTGGAC AGCAGCTTCC 661 TGCAGCAGCA TAAAAAGGAG GTGATGAAGC AGCAAGATGT CATCTATGAG CTAATCCAGA 721 CAGAGCTGCA CCATGTGAGG ACACTGAAGA TCATGACCCG CCTCTTCCGC ACGGGGATGC 781 TGGAAGAGCT ACACTTGGAG CCAGGAGTGG TCCAGGGCCT GTTCCCCTGC GTGGACGAGC 841 TCAGTGACAT CCATACACGC TTCCTCAGCC AGCTATTAGA ACGCCGACGC CAGGCCCTGT 901 GCCCTGGCAG CACCCGGAAC TTTGTCATCC ATCGCTTGGG TGATCTGCTC ATCAGCCAGT 961 TCTCAGGTCC TAGTGCGGAG CAGATGTGTA AGACCTACTC GGAGTTCTGC AGCCGCCACA 1021 GCAAGGCCTT AAAGCTCTAT AAGGAGCTGT ACGCCCGAGA CAAACGCTTC CAGCAATTCA 1081 TCCGGAAAGT GACCCGCCCC GCCGTGCTCA AGCGGCACGG GGTACAGGAG TGCATCCTGC 1141 TGGTGACTCA GCGCATCACC AAGTACCCGT TACTCATCAG CCGCATCCTG CAGCATTCCC 1201 ACGGGATCGA GGAGGAGCGC CAGGACCTGA CCACAGCACT GGGGCTAGTG AAGGAGCTGC 1261 TGTCCAATGT GGACGAGGGT ATTTATCAGC TGGAGAAAGG GGCCCGTCTG CAGGAGATCT 1321 ACAACCGCAT GGACCCTCGG GCCCAAACCC CAGTGCCTGG CAAGGGCCCC TTTGGCCGAG 1381 AGGAACTTCT GAGGCGCAAA CTCATCCACG ATGGCTGCCT GCTCTGGAAG ACAGCGACGG 1441 GGCGCTTCAA AGATGTGCTA GTGCTGCTGA TGACAGATGT ACTGGTGTTT CTCCAGGAAA 1501 AGGACCAGAA GTACATCTTT CCTACCCTGG ACAAGCCTTC AGTGGTATCG CTGCAGAATC 1561 TAATCGTACG AGACATTGCC AACCAGGAGA AAGGGATGTT TCTGATCAGC GCAGCCCCAC 1621 CTGAGATGTA CGAGGTGCAC ACAGCATCCC GGGATGACCG GAGCACCTGG ATCCGGGTCA 1681 TTCAGCAGAG CGTGCGCACA TGCCCATCCA GGGAGGACTT CCCCCTGATT GAGACAGAGG 1741 ATGAGGCTTA CCTGCGGCGA ATTAAGATGG AGTTGCAGCA GAAGGACCGG GCACTGGTGG 1801 AGCTGCTGCG AGAGAAGGTC GGGCTGTTTG CTGAGATGAC CCATTTCCAG GCCGAAGAGG 1861 ATGGTGGCAG TGGGATGGCC CTGCCCACCC TGCCCAGGGG CCTTTTCCGC TCTGAGTCCC 1921 TTGAGTCCCC TCGTGGCGAG CGGCTGCTGC AGGATGCCAT CCGTGAGGTG GAGGGTCTGA 1981 AAGACCTGCT GGTGGGGCCA GGAGTGGAAC TGCTCTTGAC ACCCCGAGAG CCAGCCCTGC 2041 CCTTGGAACC AGACAGCGGT GGTAACACGA GTCCTGGGGT CACTGCCAAT GGTGAGGCCA 2101 GAACCTTCAA TGGCTCCATT GAACTCTGCA GAGCTGACTC AGACTCTAGC CAGAGGGATC 2161 GAAATGGAAA TCAGCTGAGA TCACCGCAAG AGGAGGCGTT ACAGCGATTG GTCAATCTCT 2221 ATGGACTTCT ACATGGCCTA CAGGCAGCTG TGGCCCAGCA GGACACTCTG ATGGAAGCCC 2281 GGTTCCCTGA GGGCCCTGAG CGGCGGGAGA AGCTGTGCCG AGCCAACTCT CGGGATGGGG 2341 AGGCTGGCAG GGCTGGGGCT GCCCCTGTGG CCCCTGAAAA GCAGGCCACG GAACTGGCAT 2401 TACTGCAGCG GCAACATGCG CTGCTGCAGG AGGAGCTACG GCGCTGCCGG CGGCTAGGTG 2461 AAGAACGGGC AACCGAAGCT GGCAGCCTGG AGGCCCGGCT CCGGGAGAGT GAGCAGGCCC 2521 GGGCACTGCT GGAGCGTGAG GCCGAAGAGG CTCGAAGGCA GCTGGCCGCC CTGGGCCAGA 2581 CCGAGCCACT CCCAGCTGAG GCCCCCTGGG CCCGCAGACC TGTGGATCCT CGGCGGCGCA 2641 GCCTCCCCGC AGGCGATGCC CTGTACTTGA GTTTCAACCC CCCACAGCCC AGCCGAGGCA 2701 CTGACCGCCT GGATCTACCT GTCACTACTC GCTCTGTCCA TCGAAACTTT GAGGACCGAG 2761 AGAGGCAGGA ACTGGGGAGC CCCGAAGAGC GGCTGCAAGA CAGCAGTGAC CCTGACACTG 2821 GCAGCGAGGA GGAAGGTAGC AGCCGTCTGT CTCCGCCCCA CAGTCCACGA GACTTTACCA 2881 GAATGCAGGA CATCCCGGAG GAGACGGAGA GCCGCGACGG GGAGGCTGTA GCCTCCGAGA 2941 GCTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 3001 gcaacgaac