Construct: ORF ccsbBroadEn_11352
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001166.1_s300c1, BRDN0000389911
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCPG1 (9236)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9236 | CCPG1 | cell cycle progression 1 | NM_004748.5 | 80.5% | 79.7% | (many diffs) |
| 2 | human | 9236 | CCPG1 | cell cycle progression 1 | NM_020739.4 | 80.5% | 79.7% | (many diffs) |
| 3 | human | 9236 | CCPG1 | cell cycle progression 1 | NM_001204450.1 | 74.5% | 73.6% | (many diffs) |
| 4 | human | 100533483 | DNAAF4-CCPG1 | DNAAF4-CCPG1 readthrough (N... | NR_037923.1 | 37.4% | (many diffs) | |
| 5 | human | 9236 | CCPG1 | cell cycle progression 1 | NM_001204451.1 | 31.8% | 26.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1905
- ORF length:
- 1839
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC AACTTTTTTC TTAATAGTAT TTTCATCTCA GCCTAGTGAC GATGTATCAA 121 GTAGTGATGA AACCAGTAAT CAGCCCAGTC CTGCCTTTAG ACGACGCCGT GCTAGGAAGA 181 AGACCGTTTC TGCTTCAGAA TCTGAAGACC GGCTAGTTGC TGAACAAGAA ACTGAACCTT 241 CTAAGGAGTT GAGTAAACGT CAGTTCAGTA GTGGTCTCAA TAAGTGTGTT ATACTTGCTT 301 TGGTGATTGC AATCAGCATG GGATTTGGCC ATTTCTATGG CACAATTCAG ATTCAGAAGC 361 GTCAACAGTT AGTCAGAAAG ATACATGAAG ATGAATTGAA TGATATGAAG GATTATCTTT 421 CCCAGTGTCA ACAGGAACAA GAATCTTTTA TAGATTATAA GTCATTGAAA GAAAATCTTG 481 CAAGGTGTTG GACACTTACT GAAGCAGAGA AGATGTCCTT TGAAACTCAG AAAACGAACC 541 TTGCTACAGA AAATCAGTAT TTAAGAGTAT CCCTGGAGAA GGAAGAAAAA GCCTTATCCT 601 CATTACAGGA AGAGTTAAAC AAACTAAGAG AACAGATTAG AATATTGGAA GATAAAGGGA 661 CAAGTACTGA ATTAGTTAAA GAAAATCAGA AACTTAAGCA GCATTTGGAA GAGGAAAAGC 721 AGAAAAAACA CAGCTTTCTT AGTCAAAGGG AGACTCTGTT GACAGAAGCA AAGATGCTAA 781 AGAGAGAACT GGAGAGAGAA CGACTAGTAA CTACGGCTTT AAGGGGGGAA CTCCAGCAGT 841 TAAGTGGTAG TCAGTTACAT GGCAAGTCAG ATTCTCCCAA TGTATATACT GAAAAAAAGG 901 AAATAGCAAT CTTACGGGAA AGACTCACTG AGCTGGAACT GAAGCTAACC TTCGAACAGC 961 AGCGTTCTGA TTTGTGGGAA AGATTGTATG TTGAGGCAAA AGATCAAAAT GGAAAACAAG 1021 GAACAGATGG AAAAAAGAAA GGGGGCAGAG GAAGCCACAG GGCTAAAAAT AAGTCAAAGG 1081 AAACATTTTT GGGTTCAGTT AAGGAAACAT TTGATGCCAT GAAGAATTCT ACCAAGGAGT 1141 TTGTAAGGCA TCATAAAGAG AAAATTAAGC AGGCTAAAGA AGCTGTGAAG GAAAATCTGA 1201 AAAAATTCTC AGATTCAGTT AAATCCACTT TCAGACACTT TAAAGATACC ACCAAGAATA 1261 TCTTTGATGA AAAGGGTAAT AAAAGATTTG GTGCTACAAA AGAAGCAGCT GAAAAACCAA 1321 GAACAGTTTT TAGTGACTAT TTACATCCAC AGTATAAGGC ACCTACAGAA AACCATCATA 1381 ATAGAGGCCC TACTATGCAA AATGATGGAA GGAAAGAAAA GCCAGTTCAC TTTAAAGAAT 1441 TCAGAAAAAA TACAAATTCA AAGAAATGCA GTCCTGGGCA TGATTGTAGA GAAAATTCTC 1501 ATTCTTTCAG AGAGGCTTGT TCTGGTGTAT TTGATTGTGC TCAACAAGAG TCCATGAGCC 1561 TTTTTAACAT AGTGGTGAAT CCTATAAGGA TGGATGAATT TAGACAGATA ATTCAAAGGT 1621 ACATGTTAAA AGAACTGGAT ACTTTTTGTC ACTGGAACGA ACTTGATCAG TTCATCAATA 1681 AGTTTTTCCT AAACGGTGTC TTTATACATG ATCAGAAGCT CTTCACTGAC TTTGTTAATG 1741 ATGTTAAAGA TTATCTTAGA AACATGAAGG AATATGAAGT AGATAATGAT GGAGTATTTG 1801 AGAAGTTGGA TGAATATATA TATAGACACT TCTTTGGTCA CACTTTTTCC CCTCCATATG 1861 GACCCAGGTC GGTTTACATA AAACCGTGTC ATTACAGTAG TTTGTACCCA ACTTTCTTGT 1921 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c