Construct: ORF ccsbBroadEn_11372
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010512.1_s300c1, BRDN0000397497
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CABP1 (9478)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9478 | CABP1 | calcium binding protein 1 | XM_024449281.1 | 99.3% | 99.3% | 17_22delGTGCGT |
| 2 | human | 9478 | CABP1 | calcium binding protein 1 | XM_024449280.1 | 88.4% | 87% | (many diffs) |
| 3 | human | 9478 | CABP1 | calcium binding protein 1 | NM_031205.4 | 71.8% | 70.3% | (many diffs) |
| 4 | human | 9478 | CABP1 | calcium binding protein 1 | XM_017020238.2 | 63.7% | 61% | (many diffs) |
| 5 | human | 9478 | CABP1 | calcium binding protein 1 | NM_001033677.1 | 57.8% | 45.8% | (many diffs) |
| 6 | human | 9478 | CABP1 | calcium binding protein 1 | NM_004276.5 | 53.9% | 50.9% | (many diffs) |
| 7 | human | 9478 | CABP1 | calcium binding protein 1 | XM_017020239.2 | 47.6% | 43.6% | (many diffs) |
| 8 | mouse | 29867 | Cabp1 | calcium binding protein 1 | NM_013879.2 | 64.3% | 68.4% | (many diffs) |
| 9 | mouse | 29867 | Cabp1 | calcium binding protein 1 | NM_001310715.1 | 48.6% | 50.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 978
- ORF length:
- 912
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG CCAGTGCGTG CGTGTGTGTG TGTGTGTGTG CGCATGTGCC ACACAGAGGG 121 CATCACATTC AGCTCTCCCC GGAACCACCA TTTCCGTCAA GGATTGGAGA CTCTGTCTGT 181 TGGACCAATT TGATGCCTGT GCACGCTCAG GGCTCTCTGA ACCCCGCTCC TTGACTCTCA 241 GGGTCCCCTC TTGCGGAAAG CCCCTCCCGG GACCAGGAGC CAGGCTGGGC AGGGAGGTGA 301 CACCCTGCCT CTCTTTTGCA TTTGCTTGGT GCTGGCTGAA GATGTGCCAG GAGGAACAGA 361 CCAGCTACAT GGTGGTGCAG ACGAGCGAGG AGGGGCTGGC GGCTGACGCC GAGCTCCCGG 421 GACCGCTCCT GATGCTGGCC CAGAACTGCG CAGTCATGCA CAACCTGCTG GGCCCTGCCT 481 GCATTTTCCT GCGCAAGGGC TTCGCTGAGA ACAGGCAGCC TGATAGATCA CTGCGACCAG 541 AGGAAATTGA AGAGCTCCGA GAGGCCTTCA GAGAATTCGA CAAGGACAAG GATGGCTACA 601 TCAACTGCCG GGATCTGGGC AACTGCATGC GCACCATGGG CTACATGCCC ACCGAGATGG 661 AGCTCATCGA ACTGTCCCAG CAGATCAACA TGAACCTGGG TGGCCATGTA GATTTTGATG 721 ACTTCGTGGA GCTAATGGGG CCTAAACTCC TGGCAGAGAC AGCAGATATG ATTGGTGTAA 781 AGGAACTGCG AGATGCTTTC CGAGAGTTTG ACACCAATGG TGATGGGGAA ATAAGCACCA 841 GTGAGCTGCG AGAGGCTATG AGGAAGCTCC TGGGTCATCA GGTGGGACAC CGAGACATAG 901 AGGAAATTAT CCGAGATGTG GACCTCAATG GGGATGGACG AGTGGACTTT GAAGAGTTTG 961 TCCGGATGAT GTCCCGCTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1021 gcttatcaat ttgttgcaac gaac