Construct: ORF ccsbBroadEn_11380

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009502.1_s300c1, BRDN0000457279
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NPEPPS (9520)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9520 NPEPPS aminopeptidase puromycin se... NM_001330257.2 95.6% 95.6% 1_120del
2 human 9520 NPEPPS aminopeptidase puromycin se... NM_006310.4 95.2% 95.2% 1_132del
3 human 9520 NPEPPS aminopeptidase puromycin se... XM_017025373.1 89.6% 88.7% 1_120del;2547_2641del;2760_2761ins80
4 human 9520 NPEPPS aminopeptidase puromycin se... XM_017025372.2 89.2% 88.3% 1_132del;2559_2653del;2772_2773ins80
5 human 9520 NPEPPS aminopeptidase puromycin se... XM_024451038.1 63.4% 62% 0_1ins819;1608_1702del;1821_1822ins80
6 human 9520 NPEPPS aminopeptidase puromycin se... XM_024451039.1 63.4% 62% 0_1ins819;1608_1702del;1821_1822ins80
7 human 440434 NPEPPSP1 NPEPPS pseudogene 1 NR_036750.2 44.1% (many diffs)
8 human 101929950 LOC101929950 puromycin-sensitive aminope... NR_164156.1 28.4% (many diffs)
9 mouse 19155 Npepps aminopeptidase puromycin se... NM_008942.2 88.6% 93.1% (many diffs)
10 mouse 19155 Npepps aminopeptidase puromycin se... XM_006532514.2 81.2% 85.3% (many diffs)
11 mouse 19155 Npepps aminopeptidase puromycin se... XM_011248802.1 81.2% 85.3% (many diffs)
12 mouse 19155 Npepps aminopeptidase puromycin se... XR_879535.2 54.9% (many diffs)
13 mouse 19155 Npepps aminopeptidase puromycin se... XM_017314341.1 49.6% 52.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2694
ORF length:
2625
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCCGGAGAAG AGGCCCTTCG AGCGGCTGCC TGCCGATGTC TCCCCCATCA
121ACTACAGCCT TTGCCTCAAG CCCGACTTGC TGGACTTCAC CTTCGAGGGC AAGCTGGAGG
181CCGCCGCCCA GGTGAGGCAG GCGACTAATC AGATTGTGAT GAATTGTGCT GATATTGATA
241TTATTACAGC TTCATATGCA CCAGAAGGAG ATGAAGAAAT ACATGCTACA GGATTTAACT
301ATCAGAATGA AGATGAAAAA GTCACCTTGT CTTTCCCTAG TACTCTGCAA ACAGGTACGG
361GAACCTTAAA GATAGATTTT GTTGGAGAGC TGAATGACAA AATGAAAGGT TTCTATAGAA
421GTAAATATAC TACCCCTTCT GGAGAGGTGC GCTATGCTGC TGTAACACAG TTTGAGGCTA
481CTGATGCCCG AAGGGCTTTT CCTTGCTGGG ATGAGCCTGC TATCAAAGCA ACTTTTGATA
541TCTCATTGGT TGTTCCTAAA GACAGAGTAG CTTTATCAAA CATGAATGTA ATTGACCGGA
601AACCATACCC TGATGATGAA AATTTAGTGG AAGTGAAGTT TGCCCGCACA CCTGTTATGT
661CTACATATCT GGTGGCATTT GTTGTGGGTG AATATGACTT TGTAGAAACA AGGTCAAAAG
721ATGGTGTGTG TGTCCGTGTT TACACTCCTG TTGGCAAAGC AGAGCAAGGA AAATTTGCGT
781TAGAGGTTGC TGCTAAAACC TTGCCTTTTT ATAAGGACTA CTTCAATGTT CCTTATCCTC
841TACCTAAAAT TGATCTCATT GCTATTGCAG ACTTTGCAGC TGGTGCCATG GAGAACTGGG
901GCCTTGTTAC TTATAGGGAG ACTGCATTGC TTATTGATCC AAAAAATTCC TGTTCTTCAT
961CCCGCCAGTG GGTTGCTCTG GTTGTGGGAC ATGAACTCGC CCATCAATGG TTTGGAAATC
1021TTGTTACTAT GGAATGGTGG ACTCATCTTT GGTTAAATGA AGGTTTTGCA TCCTGGATTG
1081AATATCTGTG TGTAGACCAC TGCTTCCCAG AGTATGATAT TTGGACTCAG TTTGTTTCTG
1141CTGATTACAC CCGTGCCCAG GAGCTTGACG CCTTAGATAA CAGCCATCCT ATTGAAGTCA
1201GTGTGGGCCA TCCATCTGAG GTTGATGAGA TATTTGATGC TATATCATAT AGCAAAGGTG
1261CATCTGTCAT CCGAATGCTG CATGACTACA TTGGGGATAA GGACTTTAAG AAAGGAATGA
1321ACATGTATTT AACCAAGTTC CAACAAAAGA ATGCTGCCAC AGAGGATCTC TGGGAAAGTT
1381TAGAAAATGC TAGTGGTAAA CCTATAGCAG CTGTGATGAA TACCTGGACC AAACAAATGG
1441GATTTCCCCT CATTTATGTG GAAGCTGAAC AGGTAGAAGA TGACAGATTA TTGAGGTTGT
1501CCCAAAAGAA GTTCTGTGCT GGTGGGTCAT ATGTTGGTGA AGATTGTCCC CAGTGGATGG
1561TCCCTATCAC AATCTCTACT AGTGAAGACC CCAACCAGGC CAAACTAAAA ATTCTAATGG
1621ACAAGCCAGA GATGAATGTG GTTTTGAAAA ATGTCAAACC AGACCAATGG GTGAAGTTAA
1681ACTTAGGAAC AGTTGGGTTT TATCGGACCC AGTACAGCTC TGCCATGCTG GAAAGTTTAT
1741TACCAGGCAT TCGTGACCTT TCTCTGCCCC CTGTGGATCG ACTTGGATTA CAGAATGACC
1801TCTTCTCCTT GGCTCGAGCT GGAATCATTA GCACTGTAGA GGTTCTAAAA GTCATGGAGG
1861CTTTTGTGAA TGAGCCCAAT TATACTGTAT GGAGCGACCT GAGCTGTAAC CTGGGGATTC
1921TCTCAACTCT CTTGTCCCAC ACAGACTTCT ATGAGGAAAT CCAGGAGTTT GTGAAAGATG
1981TCTTTTCACC TATAGGGGAG AGACTGGGCT GGGACCCCAA ACCTGGAGAA GGTCATCTCG
2041ATGCACTCCT GAGGGGCTTG GTTCTGGGAA AACTAGGAAA AGCAGGACAT AAGGCAACGT
2101TAGAAGAAGC CCGTCGTCGG TTTAAGGACC ACGTGGAAGG AAAACAGATT CTCTCCGCTG
2161ATCTGAGGAG TCCTGTCTAT CTGACTGTTT TGAAGCATGG TGATGGCACT ACTTTAGATA
2221TTATGTTAAA ACTTCATAAA CAAGCAGATA TGCAAGAAGA GAAAAACCGA ATCGAAAGAG
2281TCCTTGGCGC TACTCTTTTG CCTGACCTGA TTCAAAAAGT CCTCACGTTT GCACTTTCAG
2341AAGAGGTACG TCCACAGGAC ACTGTATCGG TAATTGGTGG AGTAGCTGGA GGCAGCAAGC
2401ATGGTAGGAA AGCTGCTTGG AAATTCATAA AGGACAACTG GGAAGAACTT TATAACCGAT
2461ACCAGGGAGG ATTCTTAATA TCCAGACTAA TAAAGCTATC AGTTGAGGGA TTTGCAGTTG
2521ATAAAATGGC TGGAGAGGTT AAGGCTTTCT TCGAGAGTCA CCCAGCTCCT TCAGCTGAGC
2581GTACCATCCA GCAGTGTTGT GAAAATATTC TGCTGAATGC TGCCTGGCTA AAGCGAGATG
2641CTGAGAGCAT CCACCAGTAC CTCCTTCAGC GGAAGGCCTC ACCACCCACA GTGTTGCCAA
2701CTTTCTTGTA CAAAGTTGGc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)