Construct: ORF ccsbBroadEn_11406

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018172.1_s300c1, BRDN0000386829
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CEP57 (9702)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9702 CEP57 centrosomal protein 57 XM_006718946.3 58.4% 55.2% (many diffs)
2 human 9702 CEP57 centrosomal protein 57 NM_001243777.1 56.9% 56.7% 808_828del;832_1422del
3 human 9702 CEP57 centrosomal protein 57 NM_014679.5 53.9% 53.8% 808_811delAAAA;814_1500delinsG
4 human 9702 CEP57 centrosomal protein 57 NM_001243776.1 50.7% 50.8% (many diffs)
5 human 9702 CEP57 centrosomal protein 57 XM_017018592.1 50.7% 50.8% (many diffs)
6 human 9702 CEP57 centrosomal protein 57 XM_017018594.2 49.6% 46.3% (many diffs)
7 human 9702 CEP57 centrosomal protein 57 XM_017018593.2 48.7% 48.5% 502_503ins117;691_711del;715_1305del
8 human 9702 CEP57 centrosomal protein 57 NM_001363604.1 48.5% 48.4% 0_1ins81;727_730delAAAA;733_1419delinsG
9 human 9702 CEP57 centrosomal protein 57 XM_006718945.3 46.1% 46% 502_503ins117;691_694delAAAA;697_1383delinsG
10 human 9702 CEP57 centrosomal protein 57 XM_024448779.1 40.7% 40.6% (many diffs)
11 human 9702 CEP57 centrosomal protein 57 XR_001748050.2 22.6% 1_228del;1039_3581del
12 mouse 74360 Cep57 centrosomal protein 57 NM_001310721.1 50.4% 51.4% (many diffs)
13 mouse 74360 Cep57 centrosomal protein 57 NM_026665.4 47.8% 48.8% (many diffs)
14 mouse 74360 Cep57 centrosomal protein 57 XM_017313667.1 45.8% 47.2% (many diffs)
15 mouse 74360 Cep57 centrosomal protein 57 XR_001779042.1 26.2% (many diffs)
16 mouse 74360 Cep57 centrosomal protein 57 NR_037622.1 26% (many diffs)
17 mouse 74360 Cep57 centrosomal protein 57 XM_006510650.1 22.4% 22.7% (many diffs)
18 mouse 74360 Cep57 centrosomal protein 57 XM_006510649.1 21.1% 21.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
876
ORF length:
810
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGCGGCGTCT GTCTCTGCGG CTTCTGGTTC TCACTTGTCG AACAGCTTTG
121CTGAGCCATC AAGGTCTAAT GGAAGCATGG TTCGGCATTC TTCATCTCCA TATGTAGTAT
181ATCCTTCGGA TAAGCCTTTC CTTAATAGTG ATCTACGACG CTCCCCAAGT AAGCCTACAC
241TTGCCTATCC AGAAAGCAAC AGCAGAGCCA TATTTTCTGC TCTTAAGAAT CTTCAAGATA
301AGATTCGACG CTTGGAACTT GAGAGGATTC AGGCAGAAGA AAGTGTGAAA ACCTTGTCTA
361GAGAAACAAT TGAATATAAG AAAGTACTGG ATGAACAGAT ACAAGAAAGG GAGAATTCAA
421AGAATGAGGA ATCAAAGCAC AATCAAGAAC TGACATCTCA GTTGTTAGCT GCAGAAAATA
481AATGCAATCT ATTAGAAAAA CAATTGGAAT ACATGCGAAA TATGATAAAG CATGCCGAAA
541TGGAGAGGAC ATCTGTCTTA GAGAAACAAG TTTCCCTAGA AAGAGAACGA CAACATGATC
601AAACACATGT TCAGAGCCAA CTTGAAAAAT TGGATCTTCT TGAACAGGAG TATAACAAAC
661TTACCACAAT GCAGGCCCTT GCAGAAAAAA AAATGCAAGA GTTGGAAGCA AAACTCCATG
721AAGAAGAACA GGAAAGGAAA CGCATGCAAG CTAAGGCAGC TGAGTTGCAG ACTGGTCTAG
781AAACAAATAG ACTTATCTTT GAAGATAAGG CAACTCCGTG TGTTCCCAAT GCAAGAAGAA
841TTAAAAAAAA GAAGTCAAAA CCACCAGAAA AGGTGTGCCC AACTTTCTTG TACAAAGTtg
901gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)