Construct: ORF ccsbBroadEn_11421

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014105.1_s300c1, BRDN0000391238
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TESPA1 (9840)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9840 TESPA1 thymocyte expressed, positi... NM_001261844.1 100% 100%
2 human 9840 TESPA1 thymocyte expressed, positi... NM_001351148.1 100% 100%
3 human 9840 TESPA1 thymocyte expressed, positi... NM_014796.2 100% 100%
4 human 9840 TESPA1 thymocyte expressed, positi... XM_005269247.2 100% 100%
5 human 9840 TESPA1 thymocyte expressed, positi... XM_024449286.1 100% 100%
6 human 9840 TESPA1 thymocyte expressed, positi... NM_001351150.1 81.4% 81.4% 0_1ins213
7 human 9840 TESPA1 thymocyte expressed, positi... NM_001098815.3 73.5% 73.5% 1_414del
8 human 9840 TESPA1 thymocyte expressed, positi... NM_001136030.3 73.5% 73.5% 1_414del
9 human 9840 TESPA1 thymocyte expressed, positi... NM_001351149.2 73.5% 73.5% 1_414del
10 human 9840 TESPA1 thymocyte expressed, positi... XM_006719715.3 73.5% 73.5% 1_414del
11 human 9840 TESPA1 thymocyte expressed, positi... XM_011539035.2 73.5% 73.5% 1_414del
12 human 9840 TESPA1 thymocyte expressed, positi... XM_011539037.3 73.5% 73.5% 1_414del
13 human 9840 TESPA1 thymocyte expressed, positi... XM_017020262.1 73.5% 73.5% 1_414del
14 human 9840 TESPA1 thymocyte expressed, positi... XM_017020263.1 73.5% 73.5% 1_414del
15 human 9840 TESPA1 thymocyte expressed, positi... NM_001351151.1 69.9% 69.9% 0_1ins345
16 human 9840 TESPA1 thymocyte expressed, positi... NM_001351152.1 69.9% 69.9% 0_1ins345
17 human 9840 TESPA1 thymocyte expressed, positi... NM_001351153.1 69.9% 69.9% 0_1ins345
18 human 9840 TESPA1 thymocyte expressed, positi... NM_001351154.1 69.9% 69.9% 0_1ins345
19 human 9840 TESPA1 thymocyte expressed, positi... NM_001351155.1 69.9% 69.9% 0_1ins345
20 human 9840 TESPA1 thymocyte expressed, positi... NR_147065.1 31.3% 1_373del;1523_3668del
21 human 9840 TESPA1 thymocyte expressed, positi... NR_147068.1 31.2% (many diffs)
22 human 9840 TESPA1 thymocyte expressed, positi... NR_147067.1 30.5% 1_464del;1614_3759del
23 human 9840 TESPA1 thymocyte expressed, positi... NR_147070.1 30.4% 1_464del;705_706insGCAG;1610_3755del
24 human 9840 TESPA1 thymocyte expressed, positi... NR_147069.1 30% (many diffs)
25 human 9840 TESPA1 thymocyte expressed, positi... NR_147073.1 29.8% 1_552del;1702_3847del
26 human 9840 TESPA1 thymocyte expressed, positi... NR_147066.1 29.4% 1_464del;662_663ins43;1571_3716del
27 human 9840 TESPA1 thymocyte expressed, positi... NR_147071.1 29.3% 1_464del;659_660ins47;1567_3712del
28 human 9840 TESPA1 thymocyte expressed, positi... NR_147064.1 29.3% 1_626del;1776_3921del
29 human 9840 TESPA1 thymocyte expressed, positi... XR_001748931.1 28.7% 1_413del;1563_3992del
30 human 9840 TESPA1 thymocyte expressed, positi... NR_147072.1 28.5% 1_585del;783_784ins43;1692_3837del
31 human 9840 TESPA1 thymocyte expressed, positi... NR_147063.2 27.2% 1_637del;1787_4220del
32 human 9840 TESPA1 thymocyte expressed, positi... NR_147062.2 26.1% 1_810del;1960_4393del
33 human 9840 TESPA1 thymocyte expressed, positi... XR_001748928.1 20.5% 1_2018del;3168_5597del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1218
ORF length:
1149
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GACTGGGGGG ACCAACAAGA CTAGTTCAAG CATCTCAGAA ATTCTGGACA
121AAGTGCAAGA AGATGCAGAA GATGTCCTCT TCAGTCTGGG CTTTGGCCAA GAGGATCACA
181AAGACACTTC TCGGATACCC GCCCGATTTT TCACCACCCC CTCTCAGGCC AAGGGCATTG
241ATTTCCAGCT CTTCCTGAAG TCCCAGGTGC GGAGGATTGA AATGGAAGAC CCCTGCCTCA
301TGCTGGCCAG CAGGTTTAAG CAGGTGCAAA CACTGGCTGT CACTGCTGAT GCCTTCTTCT
361GTCTCTACTC CTATGTGTCT AAGACACCTG TCCAAAAGTT CACACCATCC CACATGTTCT
421GGAATTGCAA CCATCCAACT GATGTGCCAT CCATCAGGAT TCTGTCCCGA GAGCCTGAAC
481CCCAGTCACC CAGAGACCGC CTTCGGAAAG CCATCTCCAA GATGTGTCTG TACACATGCC
541CCCGAGACCG GCCACCACCA CCCCACAACA CCCCCAAAAG GAACAGTTTG GACCAAGTTG
601TGTTGGAAGT GATGGACAAA GTGAAAGAAG AGAAGCAGTT CCTCCAGCAA GACTCTGATT
661TGGGGCAATT CTCACAGGAA GATCCTGTGC CCCCTGCTGA GGGTAAGAAG TTGCCCACTT
721CTCCCTATCC ATGTGTCTTC TGCTGTGAAG AGGAAACACA GCAGAGGATG TCCACAGTGC
781TAGCACCATC CCAAACTCTG GATTCGAACC CCAAGGTACC CTGTTGCACA CATTCTCTGC
841CCATAGAAGA TCCACAGTGG AGCACAGACC CAGCTCAGAT AAGGAGAGAG CTGTGTAGTC
901TACCAGCCAC CAATACGGAA ACCCATCCAG CCAAGGATGA GACTTTCTGG AAAAGAAAGA
961GCAGAGCAAG AAAGAGCCTC TTCCAGAAGA ATCTCATGGG CAGGAAGGTT AAGTCCTTGG
1021ACCTGTCCAT CACCCAGCAG AAATGGAAGC AGAGTGTAGA CAGACCAGAA CTGCGTCGGT
1081CTTTAAGCCA GCAGCCACAG GACACTTTTG ACTTGGAGGA GGTGCAAAGC AACAGTGAGG
1141AGGAGCAGAG TCAGAGTCGC TGGCCCAGCA GACCCAGGCA CCCCCACCAC CACCAGACTT
1201TTGCTGGCAA AGACTCGTTG CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1261gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)