Construct: ORF ccsbBroadEn_11423
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015686.1_s300c1, BRDN0000396890
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MFAP3L (9848)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9848 | MFAP3L | microfibril associated prot... | NM_021647.8 | 24.7% | 24.4% | (many diffs) |
| 2 | human | 9848 | MFAP3L | microfibril associated prot... | XM_017008868.1 | 24.7% | 24.4% | (many diffs) |
| 3 | human | 9848 | MFAP3L | microfibril associated prot... | XM_017008869.2 | 24.7% | 24.4% | (many diffs) |
| 4 | human | 9848 | MFAP3L | microfibril associated prot... | XM_017008870.2 | 24.7% | 24.4% | (many diffs) |
| 5 | human | 9848 | MFAP3L | microfibril associated prot... | XM_017008871.1 | 24.7% | 24.4% | (many diffs) |
| 6 | human | 9848 | MFAP3L | microfibril associated prot... | XM_017008864.2 | 23.2% | 22.9% | (many diffs) |
| 7 | human | 9848 | MFAP3L | microfibril associated prot... | XM_017008865.2 | 23.2% | 22.9% | (many diffs) |
| 8 | human | 9848 | MFAP3L | microfibril associated prot... | XM_017008866.1 | 23.2% | 22.9% | (many diffs) |
| 9 | human | 9848 | MFAP3L | microfibril associated prot... | XM_017008867.2 | 23.2% | 22.9% | (many diffs) |
| 10 | human | 9848 | MFAP3L | microfibril associated prot... | XM_005263366.3 | 22.9% | 22.6% | (many diffs) |
| 11 | mouse | 71306 | Mfap3l | microfibrillar-associated p... | NM_001177881.1 | 22.3% | 20.7% | (many diffs) |
| 12 | mouse | 71306 | Mfap3l | microfibrillar-associated p... | NM_001177882.1 | 22.3% | 20.7% | (many diffs) |
| 13 | mouse | 71306 | Mfap3l | microfibrillar-associated p... | NM_027756.5 | 22.3% | 20.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 372
- ORF length:
- 306
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TCGATTGAAG AGCCATCTGA CTGTGTGCTT TCTACCTTCT GTGCCCTTTT 121 TAATCCTAGT ATCCACTCTA GCCACCGCTA AGAGTGTGAC TAACAGCACT TTAAATGGCA 181 CTAACGTGGT CTTGGGCTCT GTGCCCGTAA TCATTGCCAG AACTGACCAT ATCATAGTCA 241 AGGAAGGGAA CAGTGCCTTG ATTAACTGTA GTGTTTATGG CATCCCTGAC CCACAGTTCA 301 AGTGGTATAA TTCCATTGGC AAGCTGCTGA AAGAAGAAGA GGATGAGAAG GAGAGAGGAG 361 GAGGTAGGCT TTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 421 caatttgttg caacgaac