Construct: ORF ccsbBroadEn_11438

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001869.1_s300c1, BRDN0000388340
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC23A1 (9963)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9963 SLC23A1 solute carrier family 23 me... XM_011543769.1 61.8% 51.5% (many diffs)
2 human 9963 SLC23A1 solute carrier family 23 me... XM_011543767.1 48.5% 48.5% 1_108del;378_1091del
3 human 9963 SLC23A1 solute carrier family 23 me... XM_011543768.1 45.8% 38.3% (many diffs)
4 human 9963 SLC23A1 solute carrier family 23 me... XM_011543766.1 45.8% 45.8% 1_108del;378_1187del
5 human 9963 SLC23A1 solute carrier family 23 me... NM_005847.5 43.3% 43.3% 270_1286del
6 human 9963 SLC23A1 solute carrier family 23 me... NM_152685.3 43% 43% 270_1298del
7 human 9963 SLC23A1 solute carrier family 23 me... XM_005272149.4 40.8% 40.8% 1_108del;378_1394del
8 human 9963 SLC23A1 solute carrier family 23 me... XM_005272148.3 40.5% 40.5% 1_108del;378_1406del
9 human 9963 SLC23A1 solute carrier family 23 me... XM_011543765.2 40.5% 40.5% 1_108del;378_1406del
10 human 9963 SLC23A1 solute carrier family 23 me... XM_006714741.2 35.5% 35.5% 1_108del;378_1406del;1570_1571ins96
11 mouse 20522 Slc23a1 solute carrier family 23 (n... NM_011397.4 36.9% 36.6% (many diffs)
12 mouse 20522 Slc23a1 solute carrier family 23 (n... XM_017317851.1 36.9% 36.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
843
ORF length:
777
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG GGCCCAGGAG GACCTCGAGG GCCGGACACA GCATGAAACC ACCAGGGACC
121CCTCGACCCC GCTACCCACA GAGCCTAAGT TTGACATGTT GTACAAGATC GAGGACGTGC
181CACCTTGGTA CCTGTGCATC CTGCTGGGCT TCCAGCACTA CCTGACATGC TTCAGTGGTA
241CCATCGCCGT GCCCTTCCTG CTGGCTGAGG CGCTGTGTGT GGGCCACGAC CAGCACATGG
301TTAGTCAGCT CATCGGCACC ATCTTCACGT GCGTGGGCAT GTTCTGCACT CTCTTTGGCA
361TGATTACAGC TGTGGGGCTG TCCAACCTGC AATTTGTGGA CATGAACTCC TCTCGCAACC
421TCTTCGTGCT GGGATTTTCC ATGTTCTTCG GGCTCACGCT GCCCAATTAC CTGGAGTCCA
481ACCCTGGCGC CATCAATACA GGCATTCTTG AAGTGGATCA GATTCTGATT GTGCTGCTGA
541CCACGGAGAT GTTTGTGGGC GGGTGCCTTG CTTTCATACT TGACAACACA GTGCCAGGGA
601GCCCAGAGGA GCGTGGTCTG ATACAGTGGA AAGCTGGGGC TCATGCCAAC AGTGACATGT
661CTTCCAGCCT CAAGAGCTAC GATTTCCCCA TTGGGATGGG CATAGTAAAA AGAATTACCT
721TTCTGAAATA CATTCCTATC TGCCCAGTCT TCAAAGGATT TTCTTCAAGT TCAAAAGATC
781AGATTGCAAT TCCAGAAGAC ACTCCAGAAA ATACAGAAAC TGCATCTGTG TGCACCAAGG
841TCTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
901gcaacgaac

Download FASTA (ORF) (Full)