Transcript: Human XM_011543769.1

PREDICTED: Homo sapiens solute carrier family 23 member 1 (SLC23A1), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC23A1 (9963)
Length:
2146
CDS:
600..1691

Additional Resources:

NCBI RefSeq record:
XM_011543769.1
NBCI Gene record:
SLC23A1 (9963)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011543769.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000416781 AGAGACTTGTACCAATGTTAT pLKO_005 1896 3UTR 100% 13.200 18.480 N SLC23A1 n/a
2 TRCN0000428605 CATTGAGTCCATCGGAGATTA pLKO_005 890 CDS 100% 13.200 18.480 N SLC23A1 n/a
3 TRCN0000038237 GCCATCAATACAGGCATTCTT pLKO.1 1335 CDS 100% 5.625 7.875 N SLC23A1 n/a
4 TRCN0000038236 GCACATGGTTAGTCAGCTCAT pLKO.1 450 5UTR 100% 4.050 5.670 N SLC23A1 n/a
5 TRCN0000038234 CGTGGTGACATCATGGCTATT pLKO.1 771 CDS 100% 10.800 8.640 N SLC23A1 n/a
6 TRCN0000038235 CGTGGTCTGATACAGTGGAAA pLKO.1 1458 CDS 100% 4.950 3.960 N SLC23A1 n/a
7 TRCN0000424062 AGGAAAGGAAGCATGGTATAT pLKO_005 1704 3UTR 100% 13.200 9.240 N SLC23A1 n/a
8 TRCN0000038238 CATTCCTATCTGCCCAGTCTT pLKO.1 1577 CDS 100% 4.950 3.465 N SLC23A1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011543769.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11438 pDONR223 100% 61.8% 51.5% None (many diffs) n/a
2 ccsbBroad304_11438 pLX_304 0% 61.8% 51.5% V5 (many diffs) n/a
3 TRCN0000474619 TGAACAGTTAGGAGAACGGCCTGG pLX_317 67.6% 61.8% 51.5% V5 (many diffs) n/a
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