Construct: ORF ccsbBroadEn_11510

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007657.1_s300c1, BRDN0000386758
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SEMA4F (10505)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10505 SEMA4F ssemaphorin 4F NM_001271661.2 100% 100%
2 human 10505 SEMA4F ssemaphorin 4F XM_017003173.1 84.1% 69.6% (many diffs)
3 human 10505 SEMA4F ssemaphorin 4F NM_001271662.1 83.4% 83.4% 357_722del
4 human 10505 SEMA4F ssemaphorin 4F XM_017003174.1 83.4% 83.4% 0_1ins306
5 human 10505 SEMA4F ssemaphorin 4F XM_017003172.1 81.1% 66.6% (many diffs)
6 human 10505 SEMA4F ssemaphorin 4F NM_004263.5 79.8% 79.8% 357_821del
7 human 10505 SEMA4F ssemaphorin 4F XM_011532475.3 60.1% 60.2% (many diffs)
8 human 10505 SEMA4F ssemaphorin 4F XR_001738588.2 58.5% (many diffs)
9 human 10505 SEMA4F ssemaphorin 4F XM_011532476.3 55.2% 54% (many diffs)
10 human 10505 SEMA4F ssemaphorin 4F XM_011532477.3 55% 54% (many diffs)
11 human 10505 SEMA4F ssemaphorin 4F XR_001738590.1 40.9% (many diffs)
12 human 10505 SEMA4F ssemaphorin 4F XR_939650.3 40% (many diffs)
13 human 10505 SEMA4F ssemaphorin 4F NR_073398.2 31.6% 1_130del;487_705del;2195_5829del
14 human 10505 SEMA4F ssemaphorin 4F NR_073399.2 31.3% 1_130del;487_758del;2248_5882del
15 mouse 20355 Sema4f sema domain, immunoglobulin... NM_001308374.1 71.7% 75.9% (many diffs)
16 mouse 20355 Sema4f sema domain, immunoglobulin... XM_011241264.1 71.7% 75.9% (many diffs)
17 mouse 20355 Sema4f sema domain, immunoglobulin... XM_011241265.2 71.7% 75.9% (many diffs)
18 mouse 20355 Sema4f sema domain, immunoglobulin... NM_011350.4 68.8% 72% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1911
ORF length:
1845
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC GGCCTCTGCT GCGCGGCCCC GCCCGGGTCC CGGGCAGCCT ACAGCCTCGC
121CCTTCCCGCT ACTGCTGCTG GCGGTGCTGA GCGGCCCGGT ATCCGGCCGC GTCCCCCGCT
181CGGTGCCCAG AACCTCGCTT CCAATCTCTG AGGCTGACTC CTGTCTCACC CGGTTCGCAG
241TCCCTCACAC ATACAATTAC TCTGTTCTCC TTGTGGATCC TGCCTCCCAC ACACTTTATG
301TTGGCGCCCG GGACACCATC TTCGCTTTAT CCCTGCCCTT CTCAGGGGAG AGACCCCGCA
361GGATTGACTG GATGGTTCCT GAGGCTCACA GACAGAACTG TAGGAAGAAA GGCAAGAAAG
421AGGGGGACCT CGGGGGCCGG AAGACCCTCC AGCAGAGATG GACGACGTTT TTGAAAGCTG
481ACCTGCTCTG TCCAGGGCCT GAGCATGGCC GGGCCTCCAG TGTCCTGCAG GATGTTGCTG
541TGCTTCGACC TGAGCTTGGG GCAGGGACTC CCATCTTTTA TGGCATCTTT TCTTCCCAGT
601GGGAGGGGGC TACTATCTCT GCTGTCTGTG CCTTCCGACC ACAAGACATT CGGACAGTGC
661TGAATGGTCC CTTCAGAGAA CTAAAACATG ACTGCAACAG AGGACTGCCT GTCGTGGACA
721ATGATGTGCC CCAGCCCAGA CCTGGAGAGT GCATCACCAA CAACATGAAG CTCCGGCACT
781TTGGCTCATC TCTCTCCCTG CCTGACCGCG TACTCACCTT CATCCGGGAC CACCCACTCA
841TGGACAGGCC AGTGTTTCCA GCTGATGGCC ACCCCCTGCT GGTCACTACA GATACAGCCT
901ATCTCAGAGT CGTGGCCCAC AGGGTGACCA GCCTCTCAGG GAAAGAGTAT GATGTGCTCT
961ACCTGGGGAC AGAGGATGGA CACCTCCACC GAGCAGTGCG GATCGGAGCT CAGCTCAGCG
1021TTCTTGAAGA TCTGGCCTTA TTCCCAGAGC CACAGCCAGT TGAGAACATG AAATTGTACC
1081ACAGCTGGCT CCTGGTTGGC TCCCGTACTG AGGTGACACA AGTGAATACA ACCAACTGTG
1141GCCGTCTCCA GAGCTGCTCA GAGTGCATCC TGGCCCAGGA CCCAGTCTGT GCCTGGAGCT
1201TCCGGCTGGA TGAGTGTGTG GCCCATGCCG GGGAGCACCG AGGGTTGGTC CAAGACATAG
1261AGTCAGCAGA TGTCTCCTCT TTGTGTCCTA AAGAGCCTGG AGAACGTCCA GTAGTGTTTG
1321AAGTTCCCGT GGCTACAGCT GCGCATGTGG TCTTGCCATG TTCTCCAAGC TCAGCATGGG
1381CATCCTGTGT GTGGCACCAG CCCAGTGGAG TGACTGCACT CACCCCCCGG CGGGATGGAC
1441TGGAGGTGGT GGTGACCCCA GGGGCCATGG GCGCTTATGC CTGTGAATGT CAGGAGGGTG
1501GGGCAGCCCA TGTGGTAGCA GCTTACAGCT TGGTATGGGG CAGCCAGCGA GATGCTCCGA
1561GCCGGGCCCA CACAGTGGGG GCGGGACTGG CTGGCTTCTT CTTGGGGATT CTCGCAGCAT
1621CCCTGACTCT CATTCTGATT GGTCGGCGTC AGCAGCGACG GCGACAGAGG GAACTTCTGG
1681CTAGAGACAA GGTGGGCCTG GACCTGGGGG CTCCACCTTC TGGGACCACA AGCTACAGCC
1741AAGACCCTCC CTCCCCCTCT CCTGAAGATG AGCGGTTGCC GCTGGCCCTG GCCAAGAGGG
1801GCAGTGGCTT TGGTGGATTC TCACCACCCT TCCTGCTTGA TCCTTGCCCA AGCCCAGCCC
1861ACATTCGGCT AACTGGGGCT CCTCTAGCCA CATGTGATGA AACATCCATC TACCCAACTT
1921TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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