Construct: ORF ccsbBroadEn_11594
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016267.1_s300c1, BRDN0000390981
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HNRNPUL1 (11100)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_011526392.3 | 98.4% | 98.5% | 2091A>G;2259_2260ins36 |
| 2 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | NM_007040.6 | 93.8% | 93.9% | 2091A>G;2258_2413del |
| 3 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_005258459.4 | 92.8% | 92.8% | 2091A>G;2258_2443del |
| 4 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | NM_001301016.3 | 82.8% | 82.5% | (many diffs) |
| 5 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | NM_001321208.2 | 82.2% | 82.2% | 0_1ins300;1791A>G;1958_2113del |
| 6 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | NM_001321211.2 | 82.2% | 82.2% | 0_1ins300;1791A>G;1958_2113del |
| 7 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | NM_144732.5 | 82.2% | 82.2% | 0_1ins300;1791A>G;1958_2113del |
| 8 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_005258461.5 | 81.9% | 81.6% | (many diffs) |
| 9 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_005258463.4 | 81.2% | 81.2% | 0_1ins300;1791A>G;1958_2143del |
| 10 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_005258464.4 | 81.2% | 81.2% | 0_1ins300;1791A>G;1958_2143del |
| 11 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_005258465.5 | 81.2% | 81.2% | 0_1ins300;1791A>G;1958_2143del |
| 12 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_011526393.3 | 81.2% | 81.2% | 0_1ins300;1791A>G;1958_2143del |
| 13 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_011526394.3 | 81.2% | 81.2% | 0_1ins300;1791A>G;1958_2143del |
| 14 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_011526395.3 | 81.2% | 81.2% | 0_1ins300;1791A>G;1958_2143del |
| 15 | mouse | 232989 | Hnrnpul1 | heterogeneous nuclear ribon... | NM_144922.2 | 84.6% | 89.3% | (many diffs) |
| 16 | mouse | 232989 | Hnrnpul1 | heterogeneous nuclear ribon... | XM_006539855.3 | 73.7% | 78.6% | (many diffs) |
| 17 | mouse | 232989 | Hnrnpul1 | heterogeneous nuclear ribon... | XM_006539856.2 | 73.7% | 78.6% | (many diffs) |
| 18 | mouse | 232989 | Hnrnpul1 | heterogeneous nuclear ribon... | NM_178089.2 | 38% | 38.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2478
- ORF length:
- 2412
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TGTGCGCCGT CTGAAGGTGA ACGAACTTCG CGAGGAGCTG CAGCGCCGCG 121 GCCTGGACAC TCGAGGCCTC AAGGCCGAGC TTGCTGAGCG GCTGCAGGCG GCGTTGGAGG 181 CCGAGGAGCC TGACGACGAG CGGGAGCTCG ACGCCGACGA CGAACCGGGG CGACCCGGGC 241 ACATCAACGA GGAGGTCGAG ACCGAGGGGG GCTCCGAGCT GGAGGGGACC GCGCAGCCAC 301 CGCCGCCCGG GCTGCAGCCG CACGCGGAGC CCGGCGGCTA CTCGGGGCCG GACGGACATT 361 ATGCCATGGA CAATATTACC AGGCAGAACC AATTCTACGA TACCCAAGTC ATCAAACAAG 421 AAAACGAGTC AGGCTACGAG AGGAGACCAC TGGAAATGGA GCAGCAGCAG GCCTATCGTC 481 CAGAAATGAA GACAGAGATG AAGCAAGGAG CACCCACCAG CTTCCTCCCG CCTGAAGCTT 541 CTCAACTCAA GCCAGACAGG CAGCAATTCC AGAGTCGAAA GAGGCCTTAT GAAGAAAACC 601 GGGGACGGGG GTACTTTGAG CACCGAGAGG ATAGGAGGGG CCGCTCTCCT CAGCCTCCTG 661 CTGAAGAGGA TGAAGATGAC TTTGATGATA CCCTTGTTGC TATTGACACC TATAACTGCG 721 ACCTCCACTT CAAGGTGGCC CGAGATCGGA GTAGTGGCTA TCCGCTCACA ATTGAGGGCT 781 TTGCATACCT GTGGTCAGGA GCCCGTGCCA GCTATGGGGT CAGAAGGGGC CGTGTATGCT 841 TCGAGATGAA GATCAATGAG GAAATCTCCG TGAAGCACCT TCCGTCTACA GAGCCTGACC 901 CCCACGTGGT CCGTATCGGC TGGTCCCTGG ACTCCTGCAG CACCCAGCTA GGCGAAGAGC 961 CTTTCTCCTA TGGCTATGGA GGCACTGGGA AGAAGTCCAC CAATAGCCGG TTTGAAAACT 1021 ACGGAGACAA GTTTGCAGAG AACGATGTGA TTGGCTGCTT TGCGGATTTT GAATGTGGAA 1081 ATGACGTGGA ACTGTCTTTT ACCAAGAATG GAAAGTGGAT GGGCATTGCT TTCCGAATCC 1141 AGAAGGAAGC CTTGGGGGGT CAGGCCCTCT ATCCTCATGT CCTGGTGAAG AATTGCGCAG 1201 TGGAGTTCAA CTTCGGACAG AGAGCAGAGC CCTACTGTTC TGTCCTCCCG GGGTTTACCT 1261 TCATCCAGCA CCTTCCCCTT AGTGAGCGTA TCCGGGGCAC CGTTGGACCA AAGAGCAAGG 1321 CAGAATGTGA GATTCTGATG ATGGTGGGCC TGCCTGCTGC TGGCAAGACC ACATGGGCCA 1381 TCAAACATGC AGCCTCCAAC CCTTCCAAGA AGTACAACAT CCTGGGTACC AATGCCATCA 1441 TGGATAAGAT GCGGGTGATG GGCCTACGCC GGCAGCGGAA CTATGCTGGC CGCTGGGATG 1501 TCCTGATCCA GCAGGCCACC CAGTGCCTCA ACCGCCTCAT CCAGATTGCT GCCCGCAAGA 1561 AACGCAACTA TATCCTAGAT CAGACAAATG TTTATGGGTC AGCCCAGAGA CGAAAAATGA 1621 GACCATTTGA AGGCTTCCAG CGCAAAGCTA TTGTAATTTG TCCCACTGAC GAGGACCTAA 1681 AAGACCGAAC AATAAAGCGA ACCGACGAGG AAGGGAAGGA TGTCCCAGAT CATGCGGTCT 1741 TAGAAATGAA AGCCAACTTC ACGTTGCCAG ATGTTGGGGA CTTCCTGGAT GAGGTTCTGT 1801 TCATTGAGCT GCAGCGGGAG GAAGCGGACA AGCTAGTGAG GCAGTACAAC GAGGAAGGCC 1861 GCAAGGCTGG GCCACCCCCT GAAAAGCGCT TTGACAACCG AGGTGGTGGT GGCTTCCGGG 1921 GCCGCGGGGG TGGTGGTGGC TTCCAGCGCT ATGAAAACCG AGGACCCCCT GGAGGCAACC 1981 GTGGCGGCTT CCAGAACCGA GGGGGAGGCA GCGGTGGAGG AGGCAACTAC CGAGGAGGTT 2041 TCAACCGCAG CGGAGGTGGT GGCTATAGCC AGAACCGCTG GGGTAACAAC AACCGGGATA 2101 ACAACAACTC CAACAACAGA GGCAGCTACA ACCGGGCTCC CCAGCAACAG CCGCCGCCAC 2161 AGCAGCCTCC GCCACCACAG CCACCACCCC AGCAGCCACC GCCACCACCC AGCTACAGCC 2221 CTGCTCGGAA CCCCCCAGGG GCCAGCACCT ACAATAAGAA CAGCAACATC CCTGGCTCAA 2281 GCGCCAATAC CAGCACCCCC ACCGTCAGCA GCTACAGCCC TCCACAGACC TACCCTCAGC 2341 CCAGCTATAA CCAGTATCAG CAGTATGCCC AGCAGTGGAA CCAGTACTAT CAGAACCAGG 2401 GCCAGTGGCC GCCATACTAC GGGAACTACG ACTACGGGAG CTACTCCGGG AACACACAGG 2461 GTGGCACAAG TACACAGTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 2521 gcttatcaat ttgttgcaac gaac