Construct: ORF ccsbBroadEn_11595
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001097.1_s300c1, BRDN0000397144
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KATNA1 (11104)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11104 | KATNA1 | katanin catalytic subunit A1 | NM_001204076.1 | 100% | 100% | |
| 2 | human | 11104 | KATNA1 | katanin catalytic subunit A1 | XM_005266805.4 | 63.2% | 60.4% | (many diffs) |
| 3 | human | 11104 | KATNA1 | katanin catalytic subunit A1 | NM_007044.4 | 62.9% | 62.5% | (many diffs) |
| 4 | human | 11104 | KATNA1 | katanin catalytic subunit A1 | XM_005266804.2 | 62.9% | 62.5% | (many diffs) |
| 5 | human | 11104 | KATNA1 | katanin catalytic subunit A1 | XM_017010207.2 | 62.9% | 62.5% | (many diffs) |
| 6 | human | 11104 | KATNA1 | katanin catalytic subunit A1 | XM_017010210.2 | 62.9% | 62.5% | (many diffs) |
| 7 | human | 11104 | KATNA1 | katanin catalytic subunit A1 | XM_017010208.1 | 49.2% | 34.5% | (many diffs) |
| 8 | human | 11104 | KATNA1 | katanin catalytic subunit A1 | XM_017010209.1 | 49.2% | 34.5% | (many diffs) |
| 9 | human | 11104 | KATNA1 | katanin catalytic subunit A1 | XM_024446317.1 | 49.2% | 34.5% | (many diffs) |
| 10 | mouse | 23924 | Katna1 | katanin p60 (ATPase-contain... | NM_011835.2 | 55.7% | 57.2% | (many diffs) |
| 11 | mouse | 624710 | Gm6524 | predicted gene 6524; katani... | NR_028307.1 | 50.6% | (many diffs) | |
| 12 | mouse | 23924 | Katna1 | katanin p60 (ATPase-contain... | XM_006512738.2 | 32.4% | 34.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 999
- ORF length:
- 933
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG TCTTCTTATG ATTAGTGAGA ATGTAAAATT GGCTCGTGAA TATGCATTGC 121 TGGGAAACTA TGACTCTGCG ATGGTCTATT ATCAGGGAGT TCTTGACCAA ATGAACAAGT 181 ATCTGTACTC AGTCAAAGAT ACATACCTCC AGCAGAAATG GCAACAGGTT TGGCAGGAAA 241 TAAATGTGGA AGCTAAACAT GTTAAAGATA TCATGAAAAC ACTAGAGAGC TTTAAACTGG 301 ACAGCACTCC CTTGAAAGCG GCACAGCATG ACCTTCCAGC TTCTGAGGGA GAAGTCTGGT 361 CCATGCCTGT ACCTGTTGAA CGAAGACCCT CACCAGGACC TAGAAAACGC CAATCTTCTC 421 AGTACAGTGA CCCTAAATCA CATGGTAATC GTCCAAGTAC AACTGTCAGA GTTCACCGTT 481 CATCTGCACA GAATGTTCAC AATGACAGAG GGAAAGCTGT TCGTTGTCGT GAAAAGAAAG 541 AACAGAATAA AGGAAGAGAG GAAAAGGGAG TACTGATGGT CGGCCCACCT GGCACGGGGA 601 AGACGCTCCT TGCTAAAGCA GTAGCTACAG AATGCAAGAC AACATTCTTC AATGTCTCTT 661 CATCAACTTT GACTTCCAAA TACAGAGGAG AATCTGAGAA GCTTGTTCGT CTTCTGTTTG 721 AAATGGCTCG ATTTTATTCT CCAGCCACCA TATTTATTGA TGAGATAGAC TCCATCTGTA 781 GTCGCCGAGG GACTTCTGAA GAACATGAAG CAAGCAGAAG GGTGAAAGCG GAGCTGCTGG 841 TTCAGATGGA TGGTGTTGGA GGTACTTCTG AAAATGATGA CCCTTCCAAA ATGGTTATGG 901 TTCTGGCAGC TACTAATTTT CCCTGGGATA TAGATGAGGC TTTAAGACGA CGCCTTGAGA 961 AACGAATCTA TATTCCTTTG CCGTCAGGGA TGCGTCCTTG CCCAACTTTC TTGTACAAAG 1021 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac