Transcript: Human XM_017010209.1

PREDICTED: Homo sapiens katanin catalytic subunit A1 (KATNA1), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KATNA1 (11104)
Length:
1646
CDS:
392..1483

Additional Resources:

NCBI RefSeq record:
XM_017010209.1
NBCI Gene record:
KATNA1 (11104)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017010209.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000116647 GCCTTGAGAAACGAATCTATA pLKO.1 1122 CDS 100% 13.200 18.480 N KATNA1 n/a
2 TRCN0000116648 CCCGAATTCTTTAAGGGCATT pLKO.1 701 CDS 100% 0.000 0.000 N KATNA1 n/a
3 TRCN0000218329 ATTCTCCAGCCACCATATTTA pLKO_005 906 CDS 100% 15.000 10.500 N KATNA1 n/a
4 TRCN0000229373 GACTCTGCGATGGTCTATTAT pLKO_005 196 5UTR 100% 15.000 10.500 N KATNA1 n/a
5 TRCN0000229376 GGTTCTGGCAGCTACTAATTT pLKO_005 1069 CDS 100% 15.000 10.500 N KATNA1 n/a
6 TRCN0000116651 GTCTATTATCAGGGAGTTCTT pLKO.1 208 5UTR 100% 4.950 3.465 N KATNA1 n/a
7 TRCN0000116650 CCTGGGATATAGATGAGGCTT pLKO.1 1092 CDS 100% 2.640 1.848 N KATNA1 n/a
8 TRCN0000116649 GCCCGAATTCTTTAAGGGCAT pLKO.1 700 CDS 100% 0.000 0.000 N KATNA1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017010209.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11595 pDONR223 100% 49.2% 34.5% None (many diffs) n/a
2 ccsbBroad304_11595 pLX_304 0% 49.2% 34.5% V5 (many diffs) n/a
3 TRCN0000471804 AGGGCCGCGCCCCGAAAGTTCATT pLX_317 49% 49.2% 34.5% V5 (many diffs) n/a
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