Transcript: Mouse XM_006512738.2

PREDICTED: Mus musculus katanin p60 (ATPase-containing) subunit A1 (Katna1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Katna1 (23924)
Length:
1368
CDS:
416..1207

Additional Resources:

NCBI RefSeq record:
XM_006512738.2
NBCI Gene record:
Katna1 (23924)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006512738.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000089936 CCAGAGGCAAATAAGTTTGAT pLKO.1 260 5UTR 100% 5.625 3.938 N Katna1 n/a
2 TRCN0000325824 CCAGAGGCAAATAAGTTTGAT pLKO_005 260 5UTR 100% 5.625 3.938 N Katna1 n/a
3 TRCN0000089935 CGAGAAATGGATAGTTGAGTT pLKO.1 1174 CDS 100% 4.950 2.970 N Katna1 n/a
4 TRCN0000325896 CGAGAAATGGATAGTTGAGTT pLKO_005 1174 CDS 100% 4.950 2.970 N Katna1 n/a
5 TRCN0000089934 CGGTGGTATGATATTGCTGAT pLKO.1 350 5UTR 100% 4.050 2.430 N Katna1 n/a
6 TRCN0000325823 CGGTGGTATGATATTGCTGAT pLKO_005 350 5UTR 100% 4.050 2.430 N Katna1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006512738.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11595 pDONR223 100% 32.4% 34.2% None (many diffs) n/a
2 ccsbBroad304_11595 pLX_304 0% 32.4% 34.2% V5 (many diffs) n/a
3 TRCN0000471804 AGGGCCGCGCCCCGAAAGTTCATT pLX_317 49% 32.4% 34.2% V5 (many diffs) n/a
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