Construct: ORF ccsbBroadEn_11599

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009717.1_s300c1, BRDN0000393511
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLASRP (11129)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11129 CLASRP CLK4 associating serine/arg... NM_007056.3 29.8% 21.7% 1_45del;501_1159del;1308_2022del
2 human 11129 CLASRP CLK4 associating serine/arg... XM_011526396.2 28.7% 20.9% 1_45del;501_1159del;1308_2100del
3 human 11129 CLASRP CLK4 associating serine/arg... XR_002958247.1 27.9% 1_138del;594_1252del;1401_2158del
4 human 11129 CLASRP CLK4 associating serine/arg... NR_103529.2 27% 1_138del;594_1252del;1401_2233del
5 mouse 53609 Clasrp CLK4-associating serine/arg... NM_016680.5 26.9% 22% (many diffs)
6 mouse 53609 Clasrp CLK4-associating serine/arg... XM_011250629.1 26.9% 22% (many diffs)
7 mouse 53609 Clasrp CLK4-associating serine/arg... XM_006540191.3 26.5% 21.8% (many diffs)
8 mouse 53609 Clasrp CLK4-associating serine/arg... XM_017322361.1 26.5% 21.8% (many diffs)
9 mouse 53609 Clasrp CLK4-associating serine/arg... NR_125832.1 24.4% (many diffs)
10 mouse 53609 Clasrp CLK4-associating serine/arg... NR_125835.1 22.2% (many diffs)
11 mouse 53609 Clasrp CLK4-associating serine/arg... NR_125834.1 21.9% (many diffs)
12 mouse 53609 Clasrp CLK4-associating serine/arg... NR_125833.1 21.8% (many diffs)
13 mouse 53609 Clasrp CLK4-associating serine/arg... XM_006540192.1 20.7% 14.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
669
ORF length:
603
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT CGACTACAAG AAGAGGGCGG AGCGGAGACG GGAGTATTAT GAAAAGATCA
121AGAAGGACCC AGCCCAGTTC CTGCAGGTAC ATGGCCGAGC TTGCAAGGTG CACCTGGATT
181CTGCAGTCGC CCTGGCCGCT GAGAGCCCTG TTAATATGAT GCCCTGGCAG GGGGACACCA
241ACAACATGAT TGACCGATTC GATGTCCGTG CCCACCTGGA CCACATCCCC GACTACACCC
301CCCCTCTGCT CACCACCATC TCCCCAGAAC AGGAGTCGGA CGAACGGAAG TGTAACTACG
361AGCGCTACAG AGGCCTGGTG CAGAACGACT TTGCCGGCAT CTCAGAGGAG CAGTGCCTGT
421ACCAGATCTA CATTGATGAG TTGTACGGAG GCCTCCAGAG ACCCAGCGAA GATGAGAAGA
481AGAAGCTGGC AGAGAAGAAG GCTTCCATCG GTTATACCTA CGAGGACCTC CAGCTCCCGC
541TCCAGCTCTC GCTCCAGCTC CCGCTCTCGC CGTGGTGGGG GCTACTACCG TTCCGGCCGC
601CACGCCCGCT CCCGGTCCCG CTCCTGGTCC CGCTCCCGCT CCCGCTCCCG GCGCTATTCC
661CGGTCCCGTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
721tttgttgcaa cgaac

Download FASTA (ORF) (Full)