Construct: ORF ccsbBroadEn_11599
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009717.1_s300c1, BRDN0000393511
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLASRP (11129)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11129 | CLASRP | CLK4 associating serine/arg... | NM_007056.3 | 29.8% | 21.7% | 1_45del;501_1159del;1308_2022del |
| 2 | human | 11129 | CLASRP | CLK4 associating serine/arg... | XM_011526396.2 | 28.7% | 20.9% | 1_45del;501_1159del;1308_2100del |
| 3 | human | 11129 | CLASRP | CLK4 associating serine/arg... | XR_002958247.1 | 27.9% | 1_138del;594_1252del;1401_2158del | |
| 4 | human | 11129 | CLASRP | CLK4 associating serine/arg... | NR_103529.2 | 27% | 1_138del;594_1252del;1401_2233del | |
| 5 | mouse | 53609 | Clasrp | CLK4-associating serine/arg... | NM_016680.5 | 26.9% | 22% | (many diffs) |
| 6 | mouse | 53609 | Clasrp | CLK4-associating serine/arg... | XM_011250629.1 | 26.9% | 22% | (many diffs) |
| 7 | mouse | 53609 | Clasrp | CLK4-associating serine/arg... | XM_006540191.3 | 26.5% | 21.8% | (many diffs) |
| 8 | mouse | 53609 | Clasrp | CLK4-associating serine/arg... | XM_017322361.1 | 26.5% | 21.8% | (many diffs) |
| 9 | mouse | 53609 | Clasrp | CLK4-associating serine/arg... | NR_125832.1 | 24.4% | (many diffs) | |
| 10 | mouse | 53609 | Clasrp | CLK4-associating serine/arg... | NR_125835.1 | 22.2% | (many diffs) | |
| 11 | mouse | 53609 | Clasrp | CLK4-associating serine/arg... | NR_125834.1 | 21.9% | (many diffs) | |
| 12 | mouse | 53609 | Clasrp | CLK4-associating serine/arg... | NR_125833.1 | 21.8% | (many diffs) | |
| 13 | mouse | 53609 | Clasrp | CLK4-associating serine/arg... | XM_006540192.1 | 20.7% | 14.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 669
- ORF length:
- 603
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT CGACTACAAG AAGAGGGCGG AGCGGAGACG GGAGTATTAT GAAAAGATCA 121 AGAAGGACCC AGCCCAGTTC CTGCAGGTAC ATGGCCGAGC TTGCAAGGTG CACCTGGATT 181 CTGCAGTCGC CCTGGCCGCT GAGAGCCCTG TTAATATGAT GCCCTGGCAG GGGGACACCA 241 ACAACATGAT TGACCGATTC GATGTCCGTG CCCACCTGGA CCACATCCCC GACTACACCC 301 CCCCTCTGCT CACCACCATC TCCCCAGAAC AGGAGTCGGA CGAACGGAAG TGTAACTACG 361 AGCGCTACAG AGGCCTGGTG CAGAACGACT TTGCCGGCAT CTCAGAGGAG CAGTGCCTGT 421 ACCAGATCTA CATTGATGAG TTGTACGGAG GCCTCCAGAG ACCCAGCGAA GATGAGAAGA 481 AGAAGCTGGC AGAGAAGAAG GCTTCCATCG GTTATACCTA CGAGGACCTC CAGCTCCCGC 541 TCCAGCTCTC GCTCCAGCTC CCGCTCTCGC CGTGGTGGGG GCTACTACCG TTCCGGCCGC 601 CACGCCCGCT CCCGGTCCCG CTCCTGGTCC CGCTCCCGCT CCCGCTCCCG GCGCTATTCC 661 CGGTCCCGTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 721 tttgttgcaa cgaac