Construct: ORF ccsbBroadEn_11604

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013395.1_s300c1, BRDN0000384968
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RABL2B (11158)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028559.2 85.3% 85.3% 298_348del
2 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003234.1 59.1% 45% (many diffs)
3 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354424.2 52.6% 43.6% (many diffs)
4 human 11159 RABL2A RAB, member of RAS oncogene... NM_001306161.2 52.1% 43.3% (many diffs)
5 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354421.2 52.1% 43.3% (many diffs)
6 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354423.2 52.1% 43.3% (many diffs)
7 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003226.1 52.1% 43.3% (many diffs)
8 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354418.2 51.5% 40.9% (many diffs)
9 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354419.2 51.5% 40.9% (many diffs)
10 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003223.1 51.5% 40.9% (many diffs)
11 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354417.2 43.7% 43.7% (many diffs)
12 human 11158 RABL2B RAB, member of RAS oncogene... NM_001130922.3 43.4% 43.4% 298_684del
13 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350005.2 43.4% 43.4% 298_684del
14 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350006.2 43.4% 43.4% 298_684del
15 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350007.2 43.4% 43.4% 298_684del
16 human 11158 RABL2B RAB, member of RAS oncogene... NM_007081.4 43.4% 43.4% 298_684del
17 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028556.1 43.4% 43.4% 298_684del
18 human 11158 RABL2B RAB, member of RAS oncogene... NM_001003789.3 43.2% 43.2% 298_687del
19 human 11158 RABL2B RAB, member of RAS oncogene... NM_001130919.3 43.2% 43.2% 298_687del
20 human 11158 RABL2B RAB, member of RAS oncogene... NM_001130920.3 43.2% 43.2% 298_687del
21 human 11158 RABL2B RAB, member of RAS oncogene... NM_001130921.3 43.2% 43.2% 298_687del
22 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350003.2 43.2% 43.2% 298_687del
23 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350004.2 43.2% 43.2% 298_687del
24 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028552.1 43.2% 43.2% 298_687del
25 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028555.1 43.2% 43.2% 298_687del
26 human 11158 RABL2B RAB, member of RAS oncogene... XM_024452147.1 43.2% 43.2% 298_687del
27 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354416.2 42.9% 42.9% (many diffs)
28 human 11159 RABL2A RAB, member of RAS oncogene... NM_007082.5 42.9% 42.9% (many diffs)
29 human 11159 RABL2A RAB, member of RAS oncogene... NM_013412.4 42.9% 42.9% (many diffs)
30 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003220.1 42.9% 42.9% (many diffs)
31 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003222.1 42.9% 42.9% (many diffs)
32 human 11159 RABL2A RAB, member of RAS oncogene... NM_001306158.2 42.7% 42.7% (many diffs)
33 human 11159 RABL2A RAB, member of RAS oncogene... NM_001306159.2 42.7% 42.7% (many diffs)
34 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354412.2 42.7% 42.7% (many diffs)
35 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354413.2 42.7% 42.7% (many diffs)
36 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354414.2 42.7% 42.7% (many diffs)
37 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003213.1 42.7% 42.7% (many diffs)
38 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003214.1 42.7% 42.7% (many diffs)
39 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003215.1 42.7% 42.7% (many diffs)
40 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003216.1 42.7% 42.7% (many diffs)
41 human 11159 RABL2A RAB, member of RAS oncogene... XM_024452575.1 42.7% 42.7% (many diffs)
42 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028551.1 42.3% 42.3% 298_702del
43 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350016.2 42.1% 42.1% 298_705del
44 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350017.2 42.1% 42.1% 298_705del
45 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003212.1 41.8% 41.8% (many diffs)
46 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003210.1 41.7% 41.7% (many diffs)
47 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003211.1 41.7% 41.7% (many diffs)
48 human 11158 RABL2B RAB, member of RAS oncogene... NM_001130923.3 41.5% 41.5% 298_714del
49 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350013.2 41.5% 41.5% 298_714del
50 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350014.2 41.5% 41.5% 298_714del
51 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350015.2 41.5% 41.5% 298_714del
52 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028547.1 41.5% 41.5% 298_714del
53 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350008.2 41.4% 41.4% 298_717del
54 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350009.2 41.4% 41.4% 298_717del
55 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350010.2 41.4% 41.4% 298_717del
56 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350011.2 41.4% 41.4% 298_717del
57 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350012.2 41.4% 41.4% 298_717del
58 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028543.1 41.4% 41.4% 298_717del
59 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028544.1 41.4% 41.4% 298_717del
60 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028546.1 41.4% 41.4% 298_717del
61 human 11159 RABL2A RAB, member of RAS oncogene... NM_001306160.3 41.1% 41.1% (many diffs)
62 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354410.2 41.1% 41.1% (many diffs)
63 human 11159 RABL2A RAB, member of RAS oncogene... XM_024452573.1 41.1% 41.1% (many diffs)
64 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354405.2 41% 41% (many diffs)
65 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354406.2 41% 41% (many diffs)
66 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354407.2 41% 41% (many diffs)
67 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354408.2 41% 41% (many diffs)
68 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354409.2 41% 41% (many diffs)
69 human 11159 RABL2A RAB, member of RAS oncogene... XM_006712208.3 41% 41% (many diffs)
70 human 11159 RABL2A RAB, member of RAS oncogene... XM_006712209.3 41% 41% (many diffs)
71 human 11159 RABL2A RAB, member of RAS oncogene... XM_011510509.2 41% 41% (many diffs)
72 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003203.1 41% 41% (many diffs)
73 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003204.1 41% 41% (many diffs)
74 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003205.1 41% 41% (many diffs)
75 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003207.1 41% 41% (many diffs)
76 human 11159 RABL2A RAB, member of RAS oncogene... NR_148879.2 14.5% (many diffs)
77 human 11159 RABL2A RAB, member of RAS oncogene... NR_148882.2 14.4% (many diffs)
78 human 11159 RABL2A RAB, member of RAS oncogene... NR_148881.2 14.4% (many diffs)
79 human 11159 RABL2A RAB, member of RAS oncogene... NR_148880.2 13.3% (many diffs)
80 human 11159 RABL2A RAB, member of RAS oncogene... XR_002959036.1 11.7% (many diffs)
81 mouse 68708 Rabl2 RAB, member RAS oncogene fa... XM_006521326.3 38.4% 39.1% (many diffs)
82 mouse 68708 Rabl2 RAB, member RAS oncogene fa... NM_026817.3 38.2% 39% (many diffs)
83 mouse 68708 Rabl2 RAB, member RAS oncogene fa... XM_006521327.3 25.1% 27.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
363
ORF length:
297
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC AGAAGACAAA ACCAAACCGA GTGAGTTGGA CCAAGGGAAG TATGATGCTG
121ATGACAACGT GAAGATCATC TGCCTGGGAG ACAGCGCAGT GGGCAAATCC AAACTCATGG
181AGAGATTTCT CATGGATGGC TTTCAGCCAC AGCAGCTGTC CACGTACGCC CTGACCCTGT
241ACAAGCACAC AGCCACGGTA GATGGAAGGA CCATCCTTGT GGACTTTTGG GACACGGCAG
301GCCAGGAGCG GTTCCAGAGC ATGCATGCCT CCTACTACCA CAAGGCCCAC GCCTGCATCA
361TGTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
421gcaacgaac

Download FASTA (ORF) (Full)