Transcript: Mouse NM_026817.3

Mus musculus RAB, member RAS oncogene family-like 2 (Rabl2), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Rabl2 (68708)
Length:
1650
CDS:
152..823

Additional Resources:

NCBI RefSeq record:
NM_026817.3
NBCI Gene record:
Rabl2 (68708)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_026817.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000421812 GGTACATGATGAGGTCAATAC pLKO_005 943 3UTR 100% 10.800 8.640 N Rabl2 n/a
2 TRCN0000432419 TTTGACAGACAACCATTAATT pLKO_005 1254 3UTR 100% 15.000 10.500 N Rabl2 n/a
3 TRCN0000427514 ATATGCTCTGACTCTGTATAA pLKO_005 310 CDS 100% 13.200 9.240 N Rabl2 n/a
4 TRCN0000437921 ATGCATCCTGGTGGCCAATAA pLKO_005 532 CDS 100% 13.200 9.240 N Rabl2 n/a
5 TRCN0000048164 TCCAAACTCATGGAGAGATTT pLKO.1 254 CDS 100% 13.200 9.240 N RABL2B n/a
6 TRCN0000413371 ATGTTGTGAAGCTCTTCAATG pLKO_005 648 CDS 100% 10.800 7.560 N RABL2A n/a
7 TRCN0000446559 GAAACTAGACAGGCGTGATAC pLKO_005 967 3UTR 100% 10.800 7.560 N Rabl2 n/a
8 TRCN0000100886 GCAGACATACAGATGACTCAA pLKO.1 560 CDS 100% 4.950 3.465 N Rabl2 n/a
9 TRCN0000100889 GTCCAAACTCATGGAGAGATT pLKO.1 253 CDS 100% 4.950 3.465 N Rabl2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_026817.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11605 pDONR223 100% 84.5% 82.5% None (many diffs) n/a
2 ccsbBroad304_11605 pLX_304 0% 84.5% 82.5% V5 (many diffs) n/a
3 TRCN0000468953 ATCGAGGGTCCACGTACCTGTACT pLX_317 56.6% 84.5% 82.5% V5 (many diffs) n/a
4 ccsbBroadEn_02634 pDONR223 100% 84.4% 80.7% None (many diffs) n/a
5 ccsbBroad304_02634 pLX_304 0% 84.4% 80.7% V5 (many diffs) n/a
6 TRCN0000472616 CTCATTTTTGCCGTATCCGTGCAC pLX_317 77% 84.4% 80.7% V5 (many diffs) n/a
7 ccsbBroadEn_11604 pDONR223 100% 38.2% 39% None (many diffs) n/a
8 ccsbBroad304_11604 pLX_304 0% 38.2% 39% V5 (many diffs) n/a
9 TRCN0000471916 TGTCACCTTGGTTTGGGTTGGTTC pLX_317 100% 38.2% 39% V5 (many diffs) n/a
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