Construct: ORF ccsbBroadEn_11640

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002878.1_s300c1, BRDN0000395163
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRAPPC8 (22878)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22878 TRAPPC8 trafficking protein particl... XM_017025615.1 97.9% 97.8% 1_87del;335T>C
2 human 22878 TRAPPC8 trafficking protein particl... NM_014939.4 96.2% 96.2% 1_162del
3 human 22878 TRAPPC8 trafficking protein particl... XM_005258233.3 96.1% 96.1% 1_162del;410T>C;864_866delAGT
4 human 22878 TRAPPC8 trafficking protein particl... XM_017025616.2 94.1% 94% 1_162del;410T>C;3980_3981ins90
5 human 22878 TRAPPC8 trafficking protein particl... XM_005258234.3 94% 94% (many diffs)
6 human 22878 TRAPPC8 trafficking protein particl... XM_006722420.4 89.2% 88.5% (many diffs)
7 human 22878 TRAPPC8 trafficking protein particl... XM_017025617.2 86.3% 85.1% (many diffs)
8 human 22878 TRAPPC8 trafficking protein particl... XM_011525884.3 86.2% 85.1% (many diffs)
9 human 22878 TRAPPC8 trafficking protein particl... XM_005258235.3 83.8% 82.5% (many diffs)
10 human 22878 TRAPPC8 trafficking protein particl... XR_001753169.2 75.2% (many diffs)
11 human 22878 TRAPPC8 trafficking protein particl... XR_001753168.2 75.2% (many diffs)
12 human 22878 TRAPPC8 trafficking protein particl... XR_001753167.2 75.1% (many diffs)
13 mouse 75964 Trappc8 trafficking protein particl... XM_006526333.3 85.2% 88.1% (many diffs)
14 mouse 75964 Trappc8 trafficking protein particl... NM_177038.3 85.1% 88% (many diffs)
15 mouse 75964 Trappc8 trafficking protein particl... XM_011247030.2 84.7% 87.6% (many diffs)
16 mouse 75964 Trappc8 trafficking protein particl... XM_011247029.2 84.6% 87.4% (many diffs)
17 mouse 75964 Trappc8 trafficking protein particl... XM_017318013.1 84.4% 87.3% (many diffs)
18 mouse 75964 Trappc8 trafficking protein particl... XM_011247028.2 84.3% 87.1% (many diffs)
19 mouse 75964 Trappc8 trafficking protein particl... XM_017318012.1 84.3% 87.1% (many diffs)
20 mouse 75964 Trappc8 trafficking protein particl... XM_017318011.1 84.2% 87% (many diffs)
21 mouse 75964 Trappc8 trafficking protein particl... XM_011247031.2 83.5% 86.3% (many diffs)
22 mouse 75964 Trappc8 trafficking protein particl... XM_011247032.2 83.1% 85.9% (many diffs)
23 mouse 75964 Trappc8 trafficking protein particl... XM_011247033.2 82.2% 85.2% (many diffs)
24 mouse 75964 Trappc8 trafficking protein particl... XR_001782398.1 66.4% (many diffs)
25 mouse 75964 Trappc8 trafficking protein particl... XR_001782396.1 66.2% (many diffs)
26 mouse 75964 Trappc8 trafficking protein particl... XR_001782399.1 66% (many diffs)
27 mouse 75964 Trappc8 trafficking protein particl... XR_001782397.1 65.8% (many diffs)
28 mouse 75964 Trappc8 trafficking protein particl... NM_029491.2 47.9% 47.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
4212
ORF length:
4143
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAGAGATCCT AATAATCAAC TTCACGTAAT TAAAAATTTG AAGATAGCAG
121TAAGCAACAT TGTCACCCAG CCACCTCAGC CTGGAGCCAT CCGGAAGCTT TTGAATGATG
181TTGTTTCTGG CAGTCAGCCT GCAGAAGGAT TAGTAGCTAA TGTGATTACA GCAGGAGATT
241ATGACCTTAA CATCAGTGCC ACTACTCCAT GGTTTGAGTC TTACAGAGAA ACCTTTCTTC
301AGTCGATGCC AGCATCGGAT CATGAATTTC TGAACCACTA TTTAGCATGT ATGTTGGTAG
361CGTCATCTAG TGAAGCTGAA CCTGTGGAAC AGTTTTCAAA GTTGTCACAA GAACAGCATC
421GAATTCAGCA CAACAGTGAT TATTCCTACC CCAAGTGGTT TATACCAAAT ACACTTAAAT
481ACTATGTACT TTTACATGAT GTAAGTGCAG GAGATGAACA GAGAGCTGAA TCAATTTATG
541AAGAAATGAA ACAGAAATAT GGAACTCAGG GTTGCTATTT ACTTAAAATT AATTCTCGAA
601CATCTAATCG AGCATCAGAT GAACAGATAC CAGATCCTTG GAGTCAGTAT CTCCAGAAAA
661ATAGTATTCA AAACCAGGAA TCATATGAAG ATGGCCCTTG TACTATAACT TCAAATAAGA
721ATTCTGATAA TAACTTGCTT TCATTGGATG GATTAGATAA CGAAGTCAAA GATGGCTTAC
781CAAATAACTT TAGAGCTCAC CCACTTCAGT TGGAGCAATC CAGTGACCCT TCTAACAGTA
841TTGATGGCCC AGATCATCTA AGATCTGCTT CATCGTTACA TGAAACAAAG AAAGGAAATA
901CTGGAATAAT TCATGGTGCA TGTTTAACAC TTACTGATCA TGATAGAATT CGACAGTTTA
961TACAAGAGTT CACATTTCGG GGCCTTTTGC CACATATAGA GAAAACAATT AGGCAATTAA
1021ACGATCAGCT AATATCAAGA AAAGGTTTGA GTCGATCTCT ATTTTCTGCA ACTAAAAAAT
1081GGTTTAGTGG CAGTAAAGTT CCAGAAAAGA GCATTAATGA CCTGAAAAAT ACATCTGGCT
1141TGCTGTATCC GCCGGAAGCA CCAGAACTTC AAATCAGGAA AATGGCTGAC TTATGTTTTT
1201TGGTGCAGCA TTATGATTTG GCTTACAGTT GCTATCATAC TGCAAAGAAA GATTTTCTTA
1261ATGATCAAGC AATGCTTTAT GCAGCTGGTG CCTTGGAAAT GGCAGCAGTG TCTGCTTTTC
1321TTCAACCAGG AGCACCTAGG CCATATCCTG CTCATTACAT GGATACAGCA ATTCAGACAT
1381ACAGAGATAT CTGCAAGAAT ATGGTGTTGG CTGAAAGATG TGTGTTGCTT AGTGCTGAAC
1441TTTTAAAAAG CCAAAGCAAA TATTCAGAGG CTGCAGCTCT CCTAATACGG TTGACCAGTG
1501AGGATTCTGA TCTTCGAAGT GCACTTCTTT TGGAACAGGC AGCACATTGC TTTATAAACA
1561TGAAAAGTCC CATGGTTAGA AAATATGCAT TTCATATGAT ATTGGCAGGC CATCGATTTA
1621GTAAAGCAGG GCAGAAAAAG CATGCTTTAC GCTGTTATTG TCAAGCCATG CAAGTTTACA
1681AAGGAAAAGG CTGGTCTCTT GCAGAGGATC ACATTAATTT CACTATTGGG CGCCAGTCCT
1741ATACTCTTAG ACAGCTGGAT AATGCTGTGT CTGCTTTTAG GCATATTCTA ATTAATGAAA
1801GTAAACAATC TGCTGCTCAA CAGGGGGCTT TCCTCAGAGA ATATCTTTAT GTTTACAAGA
1861ATGTAAGTCA GCTGTCACCA GATGGTCCTT TGCCACAGCT TCCTTTACCG TATATTAACA
1921GTTCAGCAAC ACGGGTTTTT TTTGGCCATG ACAGACGACC AGCGGATGGT GAAAAACAAG
1981CAGCTACTCA TGTAAGTCTT GATCAAGAAT ATGATTCTGA ATCCTCTCAG CAGTGGCGAG
2041AACTTGAGGA ACAAGTTGTT TCTGTGGTTA ACAAAGGAGT AATTCCATCC AATTTTCATC
2101CCACACAATA CTGTTTGAAC AGTTACTCAG ATAATTCAAG ATTTCCACTT GCAGTTGTAG
2161AAGAACCAAT TACAGTGGAA GTGGCTTTTA GAAACCCTTT GAAAGTTCTA CTTTTGTTGA
2221CTGATTTGTC ATTGCTTTGG AAGTTTCATC CTAAAGATTT CAGTGGAAAG GATAATGAAG
2281AAGTTAAACA ACTAGTTACA AGTGAACCTG AAATGATTGG AGCTGAAGTT ATTTCAGAGT
2341TCTTAATTAA TGGCGAAGAA TCAAAAGTGG CAAGACTAAA GCTCTTTCCC CATCACATAG
2401GGGAGCTGCA TATTCTGGGA GTTGTTTATA ATCTTGGCAC TATTCAGGGC TCTATGACAG
2461TAGATGGCAT TGGTGCTCTT CCCGGATGTC ACACAGGAAA ATATTCCTTG AGTATGTCAG
2521TCCGAGGGAA GCAGGATTTA GAAATTCAAG GTCCTCGACT TAACAACACA AAAGAAGAGA
2581AAACATCTGT TAAATATGGC CCTGATCGAC GTTTAGATCC CATAATCACA GAAGAAATGC
2641CACTGTTGGA GGTGTTCTTT ATACATTTTC CTACAGGGCT TCTCTGTGGA GAAATCCGAA
2701AAGCATATGT AGAATTTGTC AATGTCAGCA AATGTCCACT TACTGGATTG AAGGTTGTTT
2761CTAAACGTCC AGAGTTCTTT ACTTTCGGTG GTAATACTGC TGTTCTAACA CCACTAAGTC
2821CCTCAGCTTC TGAGAATTGT AGTGCTTACA AGACTGTTGT GACAGATGCT ACCTCTGTGT
2881GTACAGCACT CATATCATCA GCTTCTTCTG TAGACTTTGG CATTGGCACA GGAAGTCAAC
2941CAGAGGTGAT TCCTGTTCCC CTTCCTGACA CTGTTCTTCT ACCCGGAGCC TCAGTGCAGC
3001TGCCAATGTG GTTACGTGGG CCTGATGAAG AAGGTGTCCA TGAAATTAAC TTTTTGTTTT
3061ACTATGAAAG TGTCAAAAAG CAGCCAAAAA TACGGCACAG AATATTAAGA CACACTGCAA
3121TTATTTGTAC CAGTCGGTCT TTAAATGTAC GGGCCACTGT CTGCAGAAGT AATTCTCTTG
3181AAAATGAAGA AGGCAGAGGA GGCAATATGC TAGTCTTTGT GGATGTGGAA AATACCAATA
3241CTAGTGAAGC AGGCGTTAAG GAATTCCACA TAGTGCAAGT ATCAAGTAGT AGCAAACACT
3301GGAAGTTACA GAAATCTGTA AATCTTTCTG AAAACAAAGA TACCAAACTT GCCAGTAGGG
3361AGAAGGGAAA GTTTTGCTTT AAGGCAATAA GATGTGAGAA AGAAGAAGCG GCCACACAGT
3421CCTCTGAAAA ATATACCTTT GCAGATATCA TCTTTGGAAA TGAACAGATA ATAAGTTCAG
3481CAAGCCCATG TGCAGACTTC TTTTATCGAA GTTTATCTTC TGAATTGAAA AAACCACAAG
3541CTCACTTGCC TGTGCATACA GAAAAACAGT CAACAGAGGA TGCTGTGAGA TTGATTCAAA
3601AATGCAGTGA GGTAGATTTG AATATTGTCA TATTATGGAA GGCATACGTT GTGGAAGACA
3661GTAAACAGCT TATTTTGGAA GGTCAACATC ATGTTATTCT TCGCACTATA GGAAAAGAAG
3721CCTTTTCATA TCCTCAGAAA CAGGAGCCAC CAGAAATGGA ACTATTGAAA TTTTTCAGGC
3781CAGAAAACAT TACAGTTTCC TCAAGGCCAT CAGTAGAGCA GCTTTCTAGT CTCATTAAAA
3841CGAGTCTTCA CTACCCAGAA TCATTTAATC ATCCATTTCA TCAAAAAAGC CTTTGTTTAG
3901TACCAGTCAC TCTTTTACTT TCCAATTGTT CTAAGGCTGA TGTAGATGTC ATAGTTGATC
3961TTCGGCATAA AACAACAAGT CCAGAAGCAC TGGAAATCCA TGGATCATTC ACATGGCTTG
4021GACAAACACA GTATAAACTT CAACTTAAAA GCCAGGAGAT TCACAGTCTG CAGCTGAAAG
4081CATGCTTTGT TCATACAGGT GTTTATAACC TTGGAACTCC TAGGGTATTT GCCAAGTTAT
4141CGGACCAAGT TACAGTGTTT GAAACAAGTC AGCAGAATTC CATGCCTGCC CTGATCATCA
4201TCAGTAATGT GTTGCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
4261caatttgttg caacgaac

Download FASTA (ORF) (Full)