Construct: ORF ccsbBroadEn_11642
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004291.1_s300c1, BRDN0000391720
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ABLIM3 (22885)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22885 | ABLIM3 | actin binding LIM protein f... | NM_001301028.3 | 100% | 100% | |
| 2 | human | 22885 | ABLIM3 | actin binding LIM protein f... | NM_001345860.1 | 94.7% | 94% | (many diffs) |
| 3 | human | 22885 | ABLIM3 | actin binding LIM protein f... | NM_001370418.1 | 94.7% | 94% | (many diffs) |
| 4 | human | 22885 | ABLIM3 | actin binding LIM protein f... | NM_001345859.1 | 92.1% | 91.4% | (many diffs) |
| 5 | human | 22885 | ABLIM3 | actin binding LIM protein f... | NM_001345861.2 | 92.1% | 91.4% | (many diffs) |
| 6 | human | 22885 | ABLIM3 | actin binding LIM protein f... | XM_005268394.2 | 87.2% | 86.6% | (many diffs) |
| 7 | human | 22885 | ABLIM3 | actin binding LIM protein f... | NM_001345858.1 | 85.4% | 84.8% | (many diffs) |
| 8 | human | 22885 | ABLIM3 | actin binding LIM protein f... | XM_024446004.1 | 85.4% | 84.8% | (many diffs) |
| 9 | human | 22885 | ABLIM3 | actin binding LIM protein f... | NM_001301018.2 | 83.3% | 82.7% | (many diffs) |
| 10 | human | 22885 | ABLIM3 | actin binding LIM protein f... | NM_001370417.1 | 83.3% | 82.7% | (many diffs) |
| 11 | human | 22885 | ABLIM3 | actin binding LIM protein f... | NM_001301015.3 | 79.3% | 78.7% | (many diffs) |
| 12 | human | 22885 | ABLIM3 | actin binding LIM protein f... | NM_014945.4 | 79.3% | 78.7% | (many diffs) |
| 13 | human | 22885 | ABLIM3 | actin binding LIM protein f... | XM_024446006.1 | 65.6% | 55.8% | (many diffs) |
| 14 | human | 22885 | ABLIM3 | actin binding LIM protein f... | XM_011537609.3 | 61.6% | 57% | (many diffs) |
| 15 | mouse | 319713 | Ablim3 | actin binding LIM protein f... | XM_006526011.3 | 86% | 92.1% | (many diffs) |
| 16 | mouse | 319713 | Ablim3 | actin binding LIM protein f... | XM_006526010.3 | 83.7% | 89.6% | (many diffs) |
| 17 | mouse | 319713 | Ablim3 | actin binding LIM protein f... | XM_006526009.3 | 79.3% | 84.8% | (many diffs) |
| 18 | mouse | 319713 | Ablim3 | actin binding LIM protein f... | XM_006526008.3 | 77.6% | 83.1% | (many diffs) |
| 19 | mouse | 319713 | Ablim3 | actin binding LIM protein f... | XM_006526007.3 | 75.7% | 81% | (many diffs) |
| 20 | mouse | 319713 | Ablim3 | actin binding LIM protein f... | XM_017317925.1 | 75.7% | 81% | (many diffs) |
| 21 | mouse | 319713 | Ablim3 | actin binding LIM protein f... | XM_006526006.3 | 73.7% | 79% | (many diffs) |
| 22 | mouse | 319713 | Ablim3 | actin binding LIM protein f... | NM_001164491.1 | 72.1% | 77.1% | (many diffs) |
| 23 | mouse | 319713 | Ablim3 | actin binding LIM protein f... | NM_198649.3 | 72.1% | 77.1% | (many diffs) |
| 24 | mouse | 319713 | Ablim3 | actin binding LIM protein f... | XM_006526005.3 | 70.7% | 75.5% | (many diffs) |
| 25 | mouse | 319713 | Ablim3 | actin binding LIM protein f... | XM_006526012.2 | 39.8% | 41.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1698
- ORF length:
- 1632
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CACTAGCATT CCTTATCAGC AGAATCCTTA CAATCCACGG GGCAGCTCCA 121 ATGTCATCCA GTGCTACCGC TGTGGAGACA CCTGCAAAGG GGAAGTGGTC CGCGTGCACA 181 ACAACCACTT CCACATCAGA TGCTTCACCT GTCAAGTATG TGGCTGTGGC CTGGCCCAGT 241 CAGGCTTCTT CTTCAAGAAC CAGGAGTACA TCTGCACCCA GGACTACCAG CAACTCTATG 301 GCACCCGCTG TGACAGCTGC CGGGACTTCA TCACAGGCGA AGTCATCTCG GCCCTGGGCC 361 GCACTTACCA CCCCAAGTGC TTCGTGTGCA GCTTGTGCAG GAAGCCTTTC CCCATTGGAG 421 ACAAGGTGAC CTTCAGCGGT AAAGAATGTG TGTGCCAAAC GTGCTCCCAG TCCATGGCCA 481 GCAGTAAGCC CATCAAGATT CGTGGACCAA GCCACTGTGC CGGGTGCAAG GAGGAGATCA 541 AGCACGGCCA GTCACTCCTG GCTCTGGACA AGCAGTGGCA CGTCAGCTGC TTCAAGTGCC 601 AGACCTGCAG CGTCATCCTC ACCGGGGAGT ATATCAGCAA GGATGGTGTT CCATACTGTG 661 AGTCCGACTA CCATGCCCAG TTTGGCATTA AATGTGAGAC TTGTGACCGA TACATCAGTG 721 GCAGAGTCTT GGAGGCAGGA GGGAAGCACT ACCACCCAAC CTGTGCCAGG TGTGTACGCT 781 GCCACCAGAT GTTCACCGAA GGAGAGGAAA TGTACCTCAC AGGTTCCGAG GTTTGGCACC 841 CCATCTGCAA ACAGGCAGCC CGGGCAGAGA AGAAGTTAAA GCATAGACGG ACATCTGAAA 901 CCTCCATCTC ACCCCCTGGA TCCAGCATTG GGTCACCCAA CCGAGTCATC TGCGACATCT 961 ACGAGAACCT GGACCTCCGG CAGAGACGGG CCTCCAGCCC GGGGTACATA GACTCCCCCA 1021 CCTACAGCCG GCAGGGCATG TCCCCCACCT TCTCCCGCTC ACCTCACCAC TACTACCGCT 1081 CTGGTGATTT GTCTACAGCA ACCAAGAGCA AAACAAGTGA AGACATCAGC CAGACCTCCA 1141 AGTACAGTCC CATCTACTCG CCAGACCCCT ACTATGCTTC GGAGTCTGAG TACTGGACCT 1201 ACCATGGGTC CCCCAAAGTG CCCCGAGCCA GAAGGTTCTC GTCTGGAGGA GAGGAGGATG 1261 ATTTTGACCG CAGCATGCAC AAGCTCCAAA GTGGAATTGG CCGGCTGATT CTGAAGGAAG 1321 AAATGAAGGC CCGGTCGAGC TCCTATGCAG ATCCCTGGAC CCCTCCCCGG AGCTCCACCA 1381 GCAGCCGGGA AGCCCTGCAC ACAGCTGGCT ATGAGATGTC CCTCAATGGC TCCCCTCGGT 1441 CGCACTACCT GGCTGACAGT GATCCTCTCA TCTCCAAATC TGCCTCCCTG CCTGCCTACC 1501 GAAGAAATGG GCTGCACAGG ACACCCAGCG CAGACCTCTT CCACTACGAC AGCATGAACG 1561 CAGTCAACTG GGGCATGCGA GAGTACAAGA TCTACCCTTA TGAACTGCTG CTGGTGACTA 1621 CAAGAGGAAG AAACCGACTG CCCAAGGATG TAGACAGGAC CCGTTTAGAG GGAAACTTTT 1681 GGAAGAGTGG CTGCTTATGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1741 gcttatcaat ttgttgcaac gaac