Transcript: Mouse NM_001164491.1

Mus musculus actin binding LIM protein family, member 3 (Ablim3), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Ablim3 (319713)
Length:
4226
CDS:
265..2313

Additional Resources:

NCBI RefSeq record:
NM_001164491.1
NBCI Gene record:
Ablim3 (319713)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001164491.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000099547 GTGGATAATGAGATCCTTAAT pLKO.1 1159 CDS 100% 13.200 18.480 N Ablim3 n/a
2 TRCN0000099548 GCGGACATCTGAAACTTCCAT pLKO.1 1086 CDS 100% 3.000 4.200 N Ablim3 n/a
3 TRCN0000099545 CGCAGTATAATCCTCTTGTAT pLKO.1 2376 3UTR 100% 5.625 4.500 N Ablim3 n/a
4 TRCN0000099549 CTGGAAGAGGAACGAACTGAA pLKO.1 2271 CDS 100% 4.950 3.465 N Ablim3 n/a
5 TRCN0000099546 GCCTTTCCCTATTGGAGATAA pLKO.1 603 CDS 100% 13.200 7.920 N Ablim3 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001164491.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11642 pDONR223 100% 72.1% 77.1% None (many diffs) n/a
2 ccsbBroad304_11642 pLX_304 0% 72.1% 77.1% V5 (many diffs) n/a
3 TRCN0000470912 TGAACTTAATCGTAGTCTGGCAAC pLX_317 16.5% 72.1% 77.1% V5 (many diffs) n/a
Download CSV