Construct: ORF ccsbBroadEn_11648
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002547.1_s300c1, BRDN0000393325
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- WDR47 (22911)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22911 | WDR47 | WD repeat domain 47 | XM_011541028.3 | 96.8% | 96.7% | 157_240del;893C>A;1105A>T |
| 2 | human | 22911 | WDR47 | WD repeat domain 47 | XM_006710460.4 | 96.7% | 96.6% | (many diffs) |
| 3 | human | 22911 | WDR47 | WD repeat domain 47 | XM_011541030.1 | 96.7% | 96.6% | (many diffs) |
| 4 | human | 22911 | WDR47 | WD repeat domain 47 | NM_001142551.1 | 96.6% | 96.5% | (many diffs) |
| 5 | human | 22911 | WDR47 | WD repeat domain 47 | XM_017000697.2 | 96.6% | 96.5% | (many diffs) |
| 6 | human | 22911 | WDR47 | WD repeat domain 47 | NM_014969.5 | 96.5% | 96.4% | (many diffs) |
| 7 | human | 22911 | WDR47 | WD repeat domain 47 | XM_011541027.3 | 96.1% | 96% | (many diffs) |
| 8 | human | 22911 | WDR47 | WD repeat domain 47 | XM_011541029.2 | 96% | 95.9% | (many diffs) |
| 9 | human | 22911 | WDR47 | WD repeat domain 47 | XM_024454177.1 | 96% | 95.9% | (many diffs) |
| 10 | human | 22911 | WDR47 | WD repeat domain 47 | XM_017000696.2 | 95.9% | 95.7% | (many diffs) |
| 11 | human | 22911 | WDR47 | WD repeat domain 47 | NM_001142550.1 | 95.8% | 95.6% | (many diffs) |
| 12 | human | 22911 | WDR47 | WD repeat domain 47 | XM_011541031.1 | 91% | 90.8% | (many diffs) |
| 13 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_011240310.1 | 87.2% | 92.2% | (many diffs) |
| 14 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_006502417.3 | 87.2% | 92.1% | (many diffs) |
| 15 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_011240311.2 | 87% | 92% | (many diffs) |
| 16 | mouse | 99512 | Wdr47 | WD repeat domain 47 | NM_181400.3 | 86.9% | 91.9% | (many diffs) |
| 17 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_017319819.1 | 86.9% | 91.9% | (many diffs) |
| 18 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_011240308.1 | 86.6% | 91.5% | (many diffs) |
| 19 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_006502414.3 | 86.5% | 91.4% | (many diffs) |
| 20 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_006502415.3 | 86.5% | 91.4% | (many diffs) |
| 21 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_017319818.1 | 86.5% | 91.4% | (many diffs) |
| 22 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_011240309.1 | 86.3% | 91.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2745
- ORF length:
- 2679
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC GGCTGAAGAA ACAGTGAATG TAAAAGAGGT TGAAATCATT AAGCTAATTT 121 TGGACTTCCT GAATTCAAAG AAGCTTCACA TTAGTATGCT GGCCCTGGAG AAGGAAAGTG 181 GAGTCATAAA TGGCCTGTTT TCAGATGATA TGCTTTTCCT GAGGTTTCGT TATATTATCC 241 TGAAGCAGAA GTTTTTAGAA GCTTTATGTG TTAACAACGC GATGTCAGCA GAAGATGAGC 301 CCCAGCATCT GGAATTTACC ATGCAAGAAG CTGTGCAATG TTTACATGCT CTAGAAGAAT 361 ACTGTCCTTC TAAAGATGAC TATAGTAAGC TCTGTTTGCT TTTGACTTTG CCTCGTCTGA 421 CCAATCATGC CGAGTTTAAG GACTGGAATC CCAGCACCGC ACGAGTTCAC TGTTTTGAAG 481 AGGCTTGTGT CATGGTTGCA GAATTCATCC CTGCTGATAG GAAGCTAAGT GAAGCTGGTT 541 TTAAGGCTAG TAACAATCGT TTATTTCAGC TTGTAATGAA AGGCCTGCTT TATGAATGCT 601 GTGTAGAATT TTGTCAGAGT AAAGCAACTG GAGAAGAAAT TACAGAAAGC GAAGTGCTTC 661 TTGGCATCGA CCTCTTATGT GGTAATGGTT GTGATGATTT GGATCTGAGT TTACTGTCAT 721 GGCTTCAGAA TCTTCCATCT TCTGTCTTCT CTTGTGCTTT TGAACAGAAA ATGCTTAATA 781 TTCATGTTGA CAAACTTCTG AAACCTACAA AAGCTGCATA TGCTGATCTT TTGACTCCTC 841 TTATCAGCAA ACTCTCTCCC TATCCATCAT CCCAAATGAG AAGACCTCAA TCAGCTGATG 901 CCTATATGAC CCGCTCTCTG AATCCTGCTT TAGATGGCCT CACCTGTGGA CTAACCAGTC 961 ATGATAAGAG AATTTCAGAC CTTGGAAACA AAACTTCTCC AATGTCACAC TCCTTTGCTA 1021 ACTTCCATTA TCCAGGGGTA CAAAACCTCA GTAGAAGTCT CATGCTTGAG AATACAGAAT 1081 GTCACTGTAT TTACGAAGAA TCCCCTGAGC GTGATACACC TGTTGATGCA CAGAGGCCTA 1141 TCGGCAGTGA AATCTTGGGC CAGAGTTCAG TTTCAGAAAA AGAGCCTGCA AATGGAGCAC 1201 AGAATCCAGG ACCAGCTAAA CAAGAAAAAA ATGAGCTTCG AGATTCAACA GAACAATTTC 1261 AAGAATATTA TAGGCAAAGA TTACGCTATC AACAGCATTT AGAACAGAAG GAGCAACAGC 1321 GGCAGATATA CCAACAGATG TTGCTTGAAG GAGGCGTGAA TCAGGAGGAT GGTCCTGATC 1381 AGCAGCAGAA TCTTACTGAA CAGTTCCTTA ATAGGTCCAT TCAAAAGCTT GGTGAATTAA 1441 ATATTGGAAT GGATGGCCTT GGTAATGAGG TATCAGCACT CAACCAGCAA TGTAATGGGA 1501 GCAAAGGCAA TGGATCTAAT GGTTCTTCTG TGACTAGTTT TACTACACCA CCCCAAGACT 1561 CTAGTCAGAG ATTAACACAT GATGCTTCAA ATATTCATAC AAGCACTCCT CGTAATCCTG 1621 GATCAACAAA TCACATACCT TTTCTGGAGG AATCACCTTG TGGAAGCCAA ATCTCTTCAG 1681 AACATTCGGT CATTAAGCCA CCTCTTGGAG ATTCTCCAGG GAGTCTTTCA AGGTCGAAAG 1741 GGGAAGAGGA TGACAAATCA AAAAAGCAGT TTGTTTGTAT TAATATCCTA GAAGACACAC 1801 AAGCTGTTAG AGCAGTGGCT TTTCATCCAG CTGGAGGTTT ATATGCTGTT GGTTCAAATT 1861 CAAAAACTCT GAGAGTATGT GCCTATCCAG ATGTAATTGA TCCAAGTGCA CATGAGACTC 1921 CTAAGCAGCC GGTGGTACGT TTTAAAAGGA ATAAACATCA TAAAGGATCC ATTTACTGTG 1981 TGGCCTGGAG TCCTTGTGGG CAGTTATTAG CAACAGGATC AAATGACAAA TACGTCAAAG 2041 TGCTGCCCTT CAATGCAGAG ACTTGTAACG CAACAGTTTC AGGACCAGAT CTGGAATTTA 2101 GTATGCATGA TGGAACAATT AGAGACTTGG CATTTATGGA AGGCCCAGAA AGCGGAGGAG 2161 CTATTTTAAT AAGTGCTGGA GCAGGGGATT GTAACATTTA TACAACCGAT TGTCAAAGAG 2221 GACAGGGCCT CCATGCTTTG AGTGGACATA CTGGGCATAT TTTAGCACTT TATACCTGGA 2281 GTGGCTGGAT GATTGCATCT GGTTCCCAAG ATAAGACTGT TAGATTTTGG GATCTTCGAG 2341 TACCAAGTTG TGTTCGTGTT GTTGGCACAA CATTTCATGG AACTGGCAGT GCAGTGGCAT 2401 CTGTAGCTGT AGATCCCAGT GGTCGTCTCT TAGCCACAGG TCAAGAAGAT TCTAGCTGCA 2461 TGTTGTATGA CATAAGAGGA GGAAGAATGG TACAAAGTTA TCATCCTCAT TCCAGTGATG 2521 TTCGCTCTGT TCGATTCTCC CCTGGAGCTC ACTACTTGCT AACAGGCTCT TATGATATGA 2581 AAATAAAGGT GACAGACCTA CAAGGGGACC TCACCAAGCA GCTTCCTATC ATGGTGGTGG 2641 GGGAGCACAA GGACAAAGTG ATTCAGTGCA GATGGCACAC CCAGGATCTT TCCTTCCTGT 2701 CATCCTCTGC AGATAGAACT GTCACCCTCT GGACTTACAA TGGGTACCCA ACTTTCTTGT 2761 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c