Construct: ORF ccsbBroadEn_11666
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002174.1_s300c1, BRDN0000390795
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PDS5B (23047)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23047 | PDS5B | PDS5 cohesin associated fac... | XM_017020453.1 | 8.2% | 7.7% | (many diffs) |
| 2 | human | 23047 | PDS5B | PDS5 cohesin associated fac... | XM_017020452.2 | 8.2% | 7.7% | (many diffs) |
| 3 | human | 23047 | PDS5B | PDS5 cohesin associated fac... | XM_011535000.2 | 8% | 7.5% | (many diffs) |
| 4 | human | 23047 | PDS5B | PDS5 cohesin associated fac... | XM_011534999.2 | 8% | 7.5% | (many diffs) |
| 5 | human | 23047 | PDS5B | PDS5 cohesin associated fac... | XM_017020451.1 | 8% | 7.5% | (many diffs) |
| 6 | human | 23047 | PDS5B | PDS5 cohesin associated fac... | NM_015032.4 | 8% | 7.5% | (many diffs) |
| 7 | human | 23047 | PDS5B | PDS5 cohesin associated fac... | XM_017020450.1 | 8% | 7.5% | (many diffs) |
| 8 | human | 23047 | PDS5B | PDS5 cohesin associated fac... | XM_005266298.4 | 8% | 7.5% | (many diffs) |
| 9 | human | 23047 | PDS5B | PDS5 cohesin associated fac... | XM_017020448.1 | 8% | 7.5% | (many diffs) |
| 10 | human | 23047 | PDS5B | PDS5 cohesin associated fac... | XM_017020449.1 | 8% | 7.5% | (many diffs) |
| 11 | mouse | 100710 | Pds5b | PDS5 cohesin associated fac... | XM_006504904.1 | 7.6% | 7.6% | (many diffs) |
| 12 | mouse | 100710 | Pds5b | PDS5 cohesin associated fac... | NM_175310.6 | 7.5% | 7.5% | (many diffs) |
| 13 | mouse | 100710 | Pds5b | PDS5 cohesin associated fac... | XM_006504903.1 | 7.5% | 7.5% | (many diffs) |
| 14 | mouse | 100710 | Pds5b | PDS5 cohesin associated fac... | NM_001346503.1 | 7.5% | 7.5% | (many diffs) |
| 15 | mouse | 100710 | Pds5b | PDS5 cohesin associated fac... | XM_006504901.1 | 7.4% | 7.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 432
- ORF length:
- 366
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TCATTCAAAG ACTAGGACCA ATGATGGAAA AATTACATAT CCGCCTGGGG 121 TCAAGGAAAT ATCAGATAAA ATATCTAAAG AGGAGATGGT GAGACGATTA AAGATGGTTG 181 TGAAAACTTT TATGGATATG GACCAGGACT CTGAAGAAGA AAAGGAGCTT TATTTAAACC 241 TAGCTTTACA TCTTGCTTCA GATTTTTTTC TCAAGCATCC TGATAAAGAT GTTCGCTTAC 301 TGGTAGCCTG CTGCCTTGCT GATATTTTCA GGATTTATGC TCCTGAAGCT CCTTACACAT 361 CCCCTGATAA ACTAAAGGCA AGTACTGATT TAAATAACTC CAAGATTGAC CGATACTTTG 421 ATTTATCTTT CTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 481 caatttgttg caacgaac