Transcript: Human NM_015032.4

Homo sapiens PDS5 cohesin associated factor B (PDS5B), mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
PDS5B (23047)
Length:
7472
CDS:
162..4505

Additional Resources:

NCBI RefSeq record:
NM_015032.4
NBCI Gene record:
PDS5B (23047)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_015032.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000236220 GACCTTATGAGCTCTATTATT pLKO_005 696 CDS 100% 15.000 21.000 N PDS5B n/a
2 TRCN0000236221 TCAAGCTATTGAGCCATATAT pLKO_005 839 CDS 100% 15.000 21.000 N PDS5B n/a
3 TRCN0000236222 GGTCAATGATCACTTACTTAA pLKO_005 1313 CDS 100% 13.200 18.480 N PDS5B n/a
4 TRCN0000022014 GCACATAGATACCGAATCTAT pLKO.1 1994 CDS 100% 0.563 0.788 N PDS5B n/a
5 TRCN0000022017 CCGCCTGGAATGTGTGAAATT pLKO.1 1148 CDS 100% 13.200 9.240 N PDS5B n/a
6 TRCN0000236218 TTACTCCTGGGCACCCTTAAT pLKO_005 5044 3UTR 100% 13.200 9.240 N PDS5B n/a
7 TRCN0000022018 CGATTAAAGATGGTTGTGAAA pLKO.1 261 CDS 100% 4.950 3.465 N PDS5B n/a
8 TRCN0000022015 CCTGATAAAGATGTTCGCTTA pLKO.1 375 CDS 100% 4.050 2.835 N PDS5B n/a
9 TRCN0000236219 CAGCTATACAGAACCTTATTT pLKO_005 627 CDS 100% 15.000 9.000 N PDS5B n/a
10 TRCN0000022016 CCAGAGTATGTTGTTCCATAT pLKO.1 3123 CDS 100% 10.800 6.480 N PDS5B n/a
11 TRCN0000191354 CGACATCAAGTAAAGGATTTA pLKO.1 1668 CDS 100% 13.200 9.240 N Pds5b n/a
12 TRCN0000159276 GAAGAAGAAGAAAGACAAAGA pLKO.1 4143 CDS 100% 4.950 2.475 Y C1orf35 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_015032.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11665 pDONR223 100% 35.6% 34.1% None (many diffs) n/a
2 ccsbBroad304_11665 pLX_304 0% 35.6% 34.1% V5 (many diffs) n/a
3 TRCN0000470658 CTTTTAGTCAGTTTATGCTCCCGG pLX_317 31.8% 35.6% 34.1% V5 (many diffs) n/a
4 ccsbBroadEn_11666 pDONR223 100% 8% 7.5% None (many diffs) n/a
5 ccsbBroad304_11666 pLX_304 0% 8% 7.5% V5 (many diffs) n/a
6 TRCN0000473837 TCGCTGTTTCTTTCGAGCCGGCCG pLX_317 100% 8% 7.5% V5 (many diffs) n/a
Download CSV