Construct: ORF ccsbBroadEn_11679

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011079.1_s300c1, BRDN0000389212
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLASP2 (23122)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23122 CLASP2 cytoplasmic linker associat... XM_024453409.1 33.6% 32.9% (many diffs)
2 human 23122 CLASP2 cytoplasmic linker associat... XM_017005982.2 33.3% 32.6% (many diffs)
3 human 23122 CLASP2 cytoplasmic linker associat... XM_017005979.2 33.3% 32.6% (many diffs)
4 human 23122 CLASP2 cytoplasmic linker associat... XM_017005981.2 33.3% 32.6% (many diffs)
5 human 23122 CLASP2 cytoplasmic linker associat... XM_017005978.2 33.3% 32.5% (many diffs)
6 human 23122 CLASP2 cytoplasmic linker associat... XM_017005976.2 33.1% 32.4% (many diffs)
7 human 23122 CLASP2 cytoplasmic linker associat... XM_024453410.1 33% 32% (many diffs)
8 human 23122 CLASP2 cytoplasmic linker associat... XM_017005986.2 33% 32% (many diffs)
9 human 23122 CLASP2 cytoplasmic linker associat... XM_017005971.2 32.8% 32.1% (many diffs)
10 human 23122 CLASP2 cytoplasmic linker associat... XM_017005985.2 32.7% 31.7% (many diffs)
11 human 23122 CLASP2 cytoplasmic linker associat... XM_017005984.2 32.7% 31.7% (many diffs)
12 human 23122 CLASP2 cytoplasmic linker associat... XM_017005983.2 32.7% 31.7% (many diffs)
13 human 23122 CLASP2 cytoplasmic linker associat... XM_017005969.2 32.6% 31.9% (many diffs)
14 human 23122 CLASP2 cytoplasmic linker associat... XM_017005968.2 32.6% 31.9% (many diffs)
15 human 23122 CLASP2 cytoplasmic linker associat... XM_017005974.2 32.3% 31.3% (many diffs)
16 human 23122 CLASP2 cytoplasmic linker associat... XM_017005973.2 32.3% 31.3% (many diffs)
17 human 23122 CLASP2 cytoplasmic linker associat... NM_001207044.2 32.2% 31.2% (many diffs)
18 human 23122 CLASP2 cytoplasmic linker associat... XM_024453408.1 32.1% 31.1% (many diffs)
19 human 23122 CLASP2 cytoplasmic linker associat... XM_017005972.2 32.1% 31.1% (many diffs)
20 human 23122 CLASP2 cytoplasmic linker associat... XM_017005970.2 32.1% 31.1% (many diffs)
21 human 23122 CLASP2 cytoplasmic linker associat... NM_001365634.1 28.2% 27.2% (many diffs)
22 human 23122 CLASP2 cytoplasmic linker associat... NM_001365633.1 28.2% 27.2% (many diffs)
23 human 23122 CLASP2 cytoplasmic linker associat... NM_001365632.1 28.1% 27% (many diffs)
24 human 23122 CLASP2 cytoplasmic linker associat... XM_017005965.1 28.1% 27% (many diffs)
25 human 23122 CLASP2 cytoplasmic linker associat... NM_001365631.1 28.1% 27% (many diffs)
26 human 23122 CLASP2 cytoplasmic linker associat... XM_017005963.1 28.1% 27% (many diffs)
27 human 23122 CLASP2 cytoplasmic linker associat... XM_006713053.1 28% 27% (many diffs)
28 human 23122 CLASP2 cytoplasmic linker associat... XM_017005959.1 27.9% 26.8% (many diffs)
29 human 23122 CLASP2 cytoplasmic linker associat... NM_001365630.1 27.9% 26.9% (many diffs)
30 human 23122 CLASP2 cytoplasmic linker associat... XM_006713052.1 27.9% 26.8% (many diffs)
31 human 23122 CLASP2 cytoplasmic linker associat... XM_017005958.1 27.9% 26.8% (many diffs)
32 human 23122 CLASP2 cytoplasmic linker associat... XM_017005960.1 27.9% 26.9% (many diffs)
33 human 23122 CLASP2 cytoplasmic linker associat... NM_015097.3 27.9% 26.8% (many diffs)
34 human 23122 CLASP2 cytoplasmic linker associat... XM_017005957.1 27.7% 26.7% (many diffs)
35 human 23122 CLASP2 cytoplasmic linker associat... XM_006713050.1 27.7% 26.7% (many diffs)
36 human 23122 CLASP2 cytoplasmic linker associat... NM_001365627.1 27.7% 26.6% (many diffs)
37 human 23122 CLASP2 cytoplasmic linker associat... XM_017005956.1 27.7% 26.6% (many diffs)
38 human 23122 CLASP2 cytoplasmic linker associat... XM_017005955.1 27.7% 26.6% (many diffs)
39 human 23122 CLASP2 cytoplasmic linker associat... XM_017005954.1 27.6% 26.5% (many diffs)
40 human 23122 CLASP2 cytoplasmic linker associat... XM_006713048.1 27.6% 26.5% (many diffs)
41 human 23122 CLASP2 cytoplasmic linker associat... NM_001365629.1 27.5% 26.5% (many diffs)
42 human 23122 CLASP2 cytoplasmic linker associat... NM_001365628.1 27.5% 26.5% (many diffs)
43 human 23122 CLASP2 cytoplasmic linker associat... XM_017005951.1 27.5% 26.5% (many diffs)
44 human 23122 CLASP2 cytoplasmic linker associat... XM_017005950.1 27.5% 26.4% (many diffs)
45 human 23122 CLASP2 cytoplasmic linker associat... XM_017005949.1 27.4% 26.4% (many diffs)
46 human 23122 CLASP2 cytoplasmic linker associat... XM_017005948.1 27.4% 26.3% (many diffs)
47 human 23122 CLASP2 cytoplasmic linker associat... XM_011533515.1 27.4% 26.4% (many diffs)
48 human 23122 CLASP2 cytoplasmic linker associat... XM_017005947.1 27.4% 26.3% (many diffs)
49 human 23122 CLASP2 cytoplasmic linker associat... XM_006713042.1 27.4% 26.3% (many diffs)
50 human 23122 CLASP2 cytoplasmic linker associat... XM_006713041.1 27.2% 26.2% (many diffs)
51 human 23122 CLASP2 cytoplasmic linker associat... XM_006713040.1 27.2% 26.2% (many diffs)
52 mouse 76499 Clasp2 CLIP associating protein 2 XM_017313691.1 35.2% 25.9% (many diffs)
53 mouse 76499 Clasp2 CLIP associating protein 2 NM_029633.2 30% 31.7% (many diffs)
54 mouse 76499 Clasp2 CLIP associating protein 2 NM_001081960.1 30% 31.7% (many diffs)
55 mouse 76499 Clasp2 CLIP associating protein 2 NM_001286600.1 29.6% 31.2% (many diffs)
56 mouse 76499 Clasp2 CLIP associating protein 2 XM_017313688.1 29.6% 31.2% (many diffs)
57 mouse 76499 Clasp2 CLIP associating protein 2 NM_001286602.1 29.5% 31.1% (many diffs)
58 mouse 76499 Clasp2 CLIP associating protein 2 XM_017313689.1 29.4% 30.6% (many diffs)
59 mouse 76499 Clasp2 CLIP associating protein 2 XM_006512395.3 29.1% 30.7% (many diffs)
60 mouse 76499 Clasp2 CLIP associating protein 2 XM_006512396.1 28.6% 29.9% (many diffs)
61 mouse 76499 Clasp2 CLIP associating protein 2 XM_017313687.1 27.2% 28.3% (many diffs)
62 mouse 76499 Clasp2 CLIP associating protein 2 XM_006512397.3 25.5% 26.3% (many diffs)
63 mouse 76499 Clasp2 CLIP associating protein 2 XM_017313686.1 25.4% 26.5% (many diffs)
64 mouse 76499 Clasp2 CLIP associating protein 2 NM_001114347.1 25.4% 26.4% (many diffs)
65 mouse 76499 Clasp2 CLIP associating protein 2 XM_006512394.3 25.3% 26.2% (many diffs)
66 mouse 76499 Clasp2 CLIP associating protein 2 XM_017313684.1 25.3% 26.2% (many diffs)
67 mouse 76499 Clasp2 CLIP associating protein 2 XM_017313685.1 25.3% 26.2% (many diffs)
68 mouse 76499 Clasp2 CLIP associating protein 2 XM_006512393.3 25.2% 26.2% (many diffs)
69 mouse 76499 Clasp2 CLIP associating protein 2 XM_006512392.3 25.1% 26.1% (many diffs)
70 mouse 76499 Clasp2 CLIP associating protein 2 XM_006512391.3 25.1% 26.1% (many diffs)
71 mouse 76499 Clasp2 CLIP associating protein 2 XM_006512390.3 25.1% 26.1% (many diffs)
72 mouse 76499 Clasp2 CLIP associating protein 2 XM_006512389.3 25.1% 25.9% (many diffs)
73 mouse 76499 Clasp2 CLIP associating protein 2 XM_006512386.3 25% 25.9% (many diffs)
74 mouse 76499 Clasp2 CLIP associating protein 2 XM_006512388.3 25% 25.9% (many diffs)
75 mouse 76499 Clasp2 CLIP associating protein 2 XM_006512387.3 24.9% 25.9% (many diffs)
76 mouse 76499 Clasp2 CLIP associating protein 2 XM_006512385.3 24.8% 25.8% (many diffs)
77 mouse 76499 Clasp2 CLIP associating protein 2 XM_006512384.3 24.8% 25.8% (many diffs)
78 mouse 76499 Clasp2 CLIP associating protein 2 XR_379881.3 23.8% (many diffs)
79 mouse 76499 Clasp2 CLIP associating protein 2 NM_001286601.1 16.1% 16.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1359
ORF length:
1293
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG GCGACTGATT TGCAAACGGA TCTGTGATTA TAAAAGCTTC GATGATGAAG
121AATCAGTGGA TGGAAATAGG CCATCATCAG CTGCATCAGC CTTCAAGGTT CCTGCACCTA
181AAACATCCGG AAATCCTGCC AACAGTGCAA GGAAGCCTGG TTCAGCAGGT GGCCCTAAGG
241TTGGAGGTGC TTCTAAGGAA GGAGGTGCTG GAGCAGTTGA TGAAGATGAT TTTATAAAAG
301CTTTTACAGA TGTCCCTTCT ATTCAGATTT ATTCTAGTCG AGAACTCGAA GAAACATTAA
361ATAAAATCAG GGAAATTTTG TCAGATGATA AACATGACTG GGATCAGCGT GCCAATGCAC
421TGAAGAAAAT TCGATCACTG CTTGTTGCTG GAGCTGCACA GTATGATTGC TTTTTTCAAC
481ATTTACGATT GTTGGATGGA GCACTTAAAC TTTCAGCTAA GGATCTTAGA TCCCAGGTGG
541TTAGAGAAGC TTGTATTACT GTAGCCCACC TTTCAACAGT TTTGGGAAAC AAGTTTGATC
601ATGGCGCTGA AGCCATTGTA CCTACACTTT TTAATCTCGT CCCCAATAGT GCAAAAGTCA
661TGGCAACTTC TGGATGTGCA GCAATCAGAT TTATCATTCG GCATACTCAT GTACCCAGAC
721TTATACCTTT AATAACAAGC AATTGCACAT CAAAATCAGT TCCCGTGAGG AGACGTTCAT
781TTGAATTTTT AGATTTATTG TTGCAAGAGT GGCAGACTCA TTCATTGGAA AGACATGCAG
841CCGTCTTGGT TGAAACTATT AAAAAGGGAA TTCATGATGC TGACGCTGAG GCCAGAGTGG
901AGGCAAGAAA GACATACATG GGTCTTAGAA ACCACTTTCC TGGTGAAGCT GAAACATTAT
961ATAATTCCCT TGAGCCATCT TATCAGAAGA GTCTTCAAAC TTACTTAAAG AGTTCTGGCA
1021GTGTAGCATC TCTTCCACAA TCAGACAGGT CCTCATCCAG CTCACAGGAA AGTCTCAATC
1081GCCCTTTTTC TTCCAAATGG TCTACAGCAA ATCCATCAAC TGTGGCTGGA AGAGTATCAG
1141CAGGCAGCAG CAAAGCCAGT TCCCTTCCAG GAAGCCTGCA GCGTTCACGA AGTGACATTG
1201ATGTGAATGC TGCTGCAGGT GCCAAGGCAC ATCATGCTGC TGGACAGTCT GTGCGAAGCG
1261GGCGCTTAGG TGCAGGTGCC CTGAATGCAG GTTCCTATGC GTCACTAGAA TGTGAAGCCT
1321TTTGGAGATC TGGGAGAACT GCAAAGCTCT ACTCTGTCTA CCCAACTTTC TTGTACAAAG
1381Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)