Construct: ORF ccsbBroadEn_11697
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018467.1_s300c1, BRDN0000393306
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- XPO6 (23214)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23214 | XPO6 | exportin 6 | XM_005255199.2 | 92.6% | 91.3% | (many diffs) |
| 2 | human | 23214 | XPO6 | exportin 6 | XM_024450215.1 | 91.2% | 91% | (many diffs) |
| 3 | human | 23214 | XPO6 | exportin 6 | XM_005255198.2 | 88% | 88% | 1_342del |
| 4 | human | 23214 | XPO6 | exportin 6 | XM_024450214.1 | 88% | 88% | 1_342del |
| 5 | human | 23214 | XPO6 | exportin 6 | NM_001270940.2 | 75.3% | 75.3% | 1_822del |
| 6 | human | 23214 | XPO6 | exportin 6 | XM_024450212.1 | 75.3% | 75.3% | 1_822del |
| 7 | human | 23214 | XPO6 | exportin 6 | XM_024450213.1 | 75.3% | 75.3% | 1_822del |
| 8 | human | 23214 | XPO6 | exportin 6 | NM_015171.4 | 74.4% | 74.4% | 1_864del |
| 9 | human | 23214 | XPO6 | exportin 6 | XM_011545772.2 | 38.3% | 38.1% | (many diffs) |
| 10 | mouse | 74204 | Xpo6 | exportin 6 | XM_017312343.1 | 83.2% | 89.1% | (many diffs) |
| 11 | mouse | 74204 | Xpo6 | exportin 6 | XM_006508250.1 | 83.2% | 89.1% | (many diffs) |
| 12 | mouse | 74204 | Xpo6 | exportin 6 | XM_017312344.1 | 82.6% | 88.8% | (many diffs) |
| 13 | mouse | 74204 | Xpo6 | exportin 6 | XM_017312345.1 | 82.6% | 88.8% | (many diffs) |
| 14 | mouse | 74204 | Xpo6 | exportin 6 | NM_001311143.1 | 67.3% | 72.7% | (many diffs) |
| 15 | mouse | 74204 | Xpo6 | exportin 6 | NM_028816.2 | 67.2% | 72.6% | (many diffs) |
| 16 | mouse | 74204 | Xpo6 | exportin 6 | XM_017312341.1 | 66.4% | 71.7% | (many diffs) |
| 17 | mouse | 74204 | Xpo6 | exportin 6 | XM_017312342.1 | 66.3% | 71.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2577
- ORF length:
- 2511
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GTCAGTTAAC GGCAGCAGCC AGAACTGTGT CTCGGGTCAG GAGCGCGGCC 121 GGCTGGGGGT CCTGGCCATG TCCTGCATCA ATGAACTCAT GTCCAAGAAC TGTGTGCCTA 181 TGGAATTTGA GGAGTATTTA CTGCGTATGT TCCAGCAGAC TTTCTACCTC CTGCAGAAAA 241 TCACCAAGGA TAACAATGCC CACACAGTGA AGAGCAGGCT AGAAGAGCTC GATGAGAGCT 301 ATATCGAGAA GTTTACTGAC TTTCTTCGGC TCTTTGTGAG TGTTCACCTA AGAAGAATCG 361 AGTCTTACTC CCAGTTCCCT GTGGTGGAGT TTTTGACACT TTTGTTCAAG TACACATTTC 421 ATCAGCCTAC TCATGAAGGT TACTTCTCTT GTTTGGATAT CTGGACGCTG TTTTTGGACT 481 ATCTGACAAG TAAAATTAAA AGTCGTCTTG GAGACAAGGA AGCAGTTCTC AACAGGTACG 541 AAGATGCCCT GGTGCTCCTG CTCACAGAGG TGTTGAATCG AATCCAGTTC AGATACAACC 601 AAGCCCAGCT GGAGGAGTTG GATGATGAGA CTCTGGATGA CGATCAGCAG ACGGAGTGGC 661 AGCGGTACTT ACGGCAGAGC TTGGAGGTGG TGGCCAAAGT GATGGAGCTC CTGCCCACGC 721 ACGCCTTCTC CACACTGTTC CCTGTTCTTC AGGACAATTT AGAAGTTTAT TTGGGATTAC 781 AACAGTTTAT AGTCACTTCA GGGTCAGGAC ACAGGTTGAA CATCACGGCG GAGAACGACT 841 GCCGGCGGCT GCACTGCTCC CTGAGAGACT TGAGCTCCCT GCTGCAGGCC GTGGGCCGCC 901 TGGCCGAGTA CTTTATCGGG GATGTGTTTG CTGCACGGTT CAATGATGCC CTCACAGTCG 961 TGGAAAGGTT GGTCAAAGTC ACTCTGTACG GATCTCAGAT AAAATTGTAC AACATTGAAA 1021 CTGCTGTGCC ATCAGTATTG AAACCTGACC TCATTGATGT GCATGCTCAG TCCCTGGCTG 1081 CGCTGCAGGC TTACTCTCAC TGGTTAGCAC AGTATTGCAG TGAAGTTCAC CGGCAGAACA 1141 CGCAGCAGTT CGTGACACTC ATCTCTACTA CCATGGATGC AATCACACCT CTAATCAGCA 1201 CCAAGGTCCA AGACAAGCTG CTGCTATCTG CGTGCCACTT ACTGGTCTCA CTGGCCACCA 1261 CCGTGCGGCC CGTCTTTCTG ATCAGCATCC CTGCAGTGCA GAAAGTATTC AACAGAATCA 1321 CTGATGCCTC TGCCCTGCGA CTTGTCGATA AGGCCCAGGT GTTGGTGTGC CGAGCCCTCT 1381 CTAACATCTT GCTGCTTCCG TGGCCAAACC TTCCAGAGAA TGAGCAGCAG TGGCCCGTGC 1441 GCTCCATCAA CCACGCCAGC CTCATCTCTG CACTCTCCCG GGACTATCGC AACCTGAAGC 1501 CCAGTGCTGT TGCCCCACAG AGAAAGATGC CACTGGATGA CACCAAACTG ATTATCCACC 1561 AGACACTCAG CGTCTTAGAA GATATTGTGG AGAATATCTC GGGGGAGTCC ACCAAGTCTC 1621 GACAGATTTG CTACCAGTCG CTGCAGGAAT CTGTTCAGGT CTCCCTGGCC CTCTTTCCAG 1681 CTTTTATCCA TCAGTCAGAT GTGACTGATG AGATGCTGAG CTTCTTCCTC ACTCTGTTTC 1741 GAGGCCTTAG AGTACAGATG GGTGTGCCTT TCACTGAGCA AATCATACAG ACTTTCCTCA 1801 ACATGTTTAC CAGAGAGCAG TTAGCCGAGA GCATCCTCCA CGAGGGCAGC ACAGGCTGCC 1861 GGGTGGTGGA GAAGTTTCTG AAGATCCTGC AGGTGGTGGT CCAGGAGCCA GGCCAGGTGT 1921 TCAAGCCCTT CCTCCCCAGC ATCATCGCCC TGTGCATGGA GCAAGTGTAT CCCATCATTG 1981 CCGAGCGTCC CTCCCCTGAT GTGAAGGCCG AGCTGTTTGA GCTCCTTTTC CGGACGCTCC 2041 ATCACAACTG GAGGTACTTC TTCAAGTCCA CCGTGCTGGC CAGTGTCCAG AGGGGGATCG 2101 CTGAGGAGCA GATGGAGAAT GAGCCCCAGT TCAGTGCCAT CATGCAGGCT TTCGGACAGT 2161 CCTTTCTCCA GCCCGACATC CACCTTTTTA AACAAAATCT CTTCTACTTG GAGACTCTCA 2221 ACACCAAGCA GAAGCTGTAC CACAAGAAGA TCTTCCGGAC TGCCATGCTG TTCCAGTTTG 2281 TGAACGTGCT GCTCCAGGTC CTGGTCCACA AGTCCCATGA TCTTCTGCAG GAGGAGATTG 2341 GCATCGCCAT CTACAACATG GCCTCAGTCG ACTTTGATGG CTTCTTTGCC GCCTTCCTCC 2401 CAGAGTTCCT GACCAGCTGT GATGGTGTGG ATGCCAACCA GAAAAGTGTG CTGGGGCGGA 2461 ATTTCAAGAT GGATCGGGAC CTGCCCTCAT TCACCCAGAA TGTGCACAGG CTGGTCAACG 2521 ACCTGCGCTA CTACAGACTC TGCAACGACA GCCTGCCCCC TGGCACTGTG AAGCTCTACC 2581 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 2641 aac