Transcript: Mouse XM_006508250.1

PREDICTED: Mus musculus exportin 6 (Xpo6), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Xpo6 (74204)
Length:
3579
CDS:
687..3008

Additional Resources:

NCBI RefSeq record:
XM_006508250.1
NBCI Gene record:
Xpo6 (74204)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006508250.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000370925 TTGGACTATCTGACAAGTAAA pLKO_005 903 CDS 100% 13.200 9.240 N XPO6 n/a
2 TRCN0000105440 GCCCAGGAGAAATTCGACATT pLKO.1 3399 3UTR 100% 4.950 3.465 N Xpo6 n/a
3 TRCN0000324566 GCCCAGGAGAAATTCGACATT pLKO_005 3399 3UTR 100% 4.950 3.465 N Xpo6 n/a
4 TRCN0000105442 CCAGTTCTTCAGGACAATTTA pLKO.1 1170 CDS 100% 15.000 9.000 N Xpo6 n/a
5 TRCN0000324568 CCAGTTCTTCAGGACAATTTA pLKO_005 1170 CDS 100% 15.000 9.000 N Xpo6 n/a
6 TRCN0000370989 CCACCAAGTCTCGACAGATTT pLKO_005 2038 CDS 100% 13.200 18.480 N XPO6 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006508250.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11697 pDONR223 100% 83.2% 89.1% None (many diffs) n/a
2 ccsbBroad304_11697 pLX_304 0% 83.2% 89.1% V5 (many diffs) n/a
3 TRCN0000474235 CATAAAATAATGCTTTTCGGCGGA pLX_317 21.2% 83.2% 89.1% V5 (many diffs) n/a
Download CSV