Transcript: Human XM_005255199.2

PREDICTED: Homo sapiens exportin 6 (XPO6), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
XPO6 (23214)
Length:
3167
CDS:
263..2605

Additional Resources:

NCBI RefSeq record:
XM_005255199.2
NBCI Gene record:
XPO6 (23214)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005255199.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000376744 TCGTGGAAAGGTTGGTCAAAG pLKO_005 984 CDS 100% 10.800 15.120 N XPO6 n/a
2 TRCN0000180163 CCATCACAACTGGAGGTACTT pLKO.1 2065 CDS 100% 4.950 6.930 N XPO6 n/a
3 TRCN0000219863 ATGGAATTTGAGGAGTATTTA pLKO.1 141 5UTR 100% 15.000 10.500 N XPO6 n/a
4 TRCN0000370989 CCACCAAGTCTCGACAGATTT pLKO_005 1635 CDS 100% 13.200 9.240 N XPO6 n/a
5 TRCN0000365712 TATGGAATTTGAGGAGTATTT pLKO_005 140 5UTR 100% 13.200 9.240 N XPO6 n/a
6 TRCN0000370925 TTGGACTATCTGACAAGTAAA pLKO_005 500 CDS 100% 13.200 9.240 N XPO6 n/a
7 TRCN0000219864 TACTAGGAGGCACCAGGAAAT pLKO.1 2852 3UTR 100% 10.800 7.560 N XPO6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005255199.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11697 pDONR223 100% 92.6% 91.3% None (many diffs) n/a
2 ccsbBroad304_11697 pLX_304 0% 92.6% 91.3% V5 (many diffs) n/a
3 TRCN0000474235 CATAAAATAATGCTTTTCGGCGGA pLX_317 21.2% 92.6% 91.3% V5 (many diffs) n/a
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