Construct: ORF ccsbBroadEn_11698

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015840.1_s300c1, BRDN0000394776
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DTX4 (23220)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23220 DTX4 deltex E3 ubiquitin ligase 4 NM_001300727.1 100% 100%
2 human 23220 DTX4 deltex E3 ubiquitin ligase 4 XM_006718483.3 100% 100%
3 human 23220 DTX4 deltex E3 ubiquitin ligase 4 NM_015177.2 82.8% 82.8% 1_318del
4 mouse 207521 Dtx4 deltex 4, E3 ubiquitin ligase XM_006526816.2 86.9% 92.5% (many diffs)
5 mouse 207521 Dtx4 deltex 4, E3 ubiquitin ligase NM_172442.3 72.1% 76.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1608
ORF length:
1539
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGAAGTGGGC ATCACCATCC AGCATGCCTA TGAGAAGCAG CACCCCTGGA
121TCGACCTCAC TTCCATTGGC TTTAGCTACG TAATTGACTT CAACACCATG GGCCAGATCA
181ACCGTCAGAC CCAGCGCCAA CGCCGCGTCC GCCGGCGCCT CGACCTCATC TACCCCATGG
241TCACAGGGAC CTTGCCTAAG GCTCAGTCCT GGCCAGTCAG CCCTGGGCCA GCCACCTCGC
301CCCCCATGTC CCCCTGCTCC TGTCCCCAGT GTGTCTTGGT GATGAGTGTT AAGGCAGCCG
361TGGTCAATGG CAGCACTGGG CCCCTACAGC TGCCAGTGAC CCGCAAGAAC ATGCCGCCTC
421CTGGAGTGGT CAAGCTACCC CCACTGCCAG GCTCTGGGGC CAAGCCACTG GACAGCACAG
481GCACCATTCG AGGCCCACTG AAGACCGCCC CATCGCAGGT GATCCGGAGA CAAGCCTCCA
541GCATGCCCAC TGGGACAACC ATGGGCTCTC CTGCCAGTCC CCCAGGACCC AACAGCAAGA
601CCGGAAGGGT GGCCCTGGCC ACCTTGAATC GTACCAACCT GCAGCGACTG GCCATTGCCC
661AGTCCCGGGT GCTGATCGCC TCTGGGGTCC CCACAGTCCC AGTGAAGAAC CTAAATGGGT
721CCAGTCCTGT CAACCCTGCC TTGGCAGGAA TCACTGGGAT CCTCATGAGT GCAGCGGGGC
781TGCCTGTGTG TCTCACCAGG CCACCAAAGC TGGTCCTACA CCCACCCCCC GTCAGCAAGA
841GTGAAATAAA ATCCATCCCA GGGGTTTCCA ACACAAGCCG CAAGACCACC AAAAAACAAG
901CCAAGAAAGG TAAAACCCCA GAGGAAGTGC TAAAAAAATA TCTACAGAAA GTCCGGCACC
961CACCAGATGA GGACTGCACC ATCTGTATGG AACGCCTCAC GGCCCCCTCA GGCTACAAGG
1021GCCCGCAGCC TACGGTAAAA CCTGACCTGG TAGGGAAGCT GTCCAGATGC GGCCACGTCT
1081ACCACATCTA CTGCTTGGTT GCCATGTACA ACAATGGGAA CAAGGATGGA AGTTTGCAGT
1141GTCCAACCTG CAAGACCATT TATGGGGTGA AGACAGGCAC CCAACCTCCA GGGAAGATGG
1201AGTACCACCT CATCCCCCAC TCCTTGCCTG GCCACCCAGA CTGCAAAACC ATCCGGATCA
1261TCTACAGCAT CCCCCCCGGC ATTCAGGGAC CGGAACACCC GAATCCTGGG AAGAGTTTCA
1321GCGCCCGAGG CTTCCCACGA CACTGTTACC TTCCGGACAG CGAGAAAGGG AGAAAAGTTC
1381TGAAGCTGCT GCTCGTGGCC TGGGATCGCC GCCTCATTTT TGCCATTGGC ACCTCCAGCA
1441CCACAGGCGA GTCAGACACC GTCATCTGGA ATGAGGTCCA CCACAAGACA GAGTTTGGCT
1501CTAATCTCAC TGGCCATGGC TACCCAGATG CCAATTACCT GGATAATGTG CTGGCTGAAC
1561TGGCTGCCCA GGGCATCTCT GAGGACAGCA CTGCCCAGGA GAAGGACTTG CCAACTTTCT
1621TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)