Construct: ORF ccsbBroadEn_11741
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001786.1_s300c1, BRDN0000390764
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZFYVE26 (23503)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23503 | ZFYVE26 | zinc finger FYVE-type conta... | XM_017021128.1 | 18.6% | 18.2% | (many diffs) |
| 2 | human | 23503 | ZFYVE26 | zinc finger FYVE-type conta... | XM_017021127.2 | 18.3% | 17.9% | (many diffs) |
| 3 | human | 23503 | ZFYVE26 | zinc finger FYVE-type conta... | XM_017021126.1 | 15.8% | 15.5% | (many diffs) |
| 4 | human | 23503 | ZFYVE26 | zinc finger FYVE-type conta... | XM_017021125.1 | 12.8% | 12.7% | (many diffs) |
| 5 | human | 23503 | ZFYVE26 | zinc finger FYVE-type conta... | NM_015346.4 | 12.7% | 12.5% | (many diffs) |
| 6 | human | 23503 | ZFYVE26 | zinc finger FYVE-type conta... | XM_017021124.1 | 12.7% | 12.5% | (many diffs) |
| 7 | mouse | 211978 | Zfyve26 | zinc finger, FYVE domain co... | XM_017315014.1 | 17% | 17.7% | (many diffs) |
| 8 | mouse | 211978 | Zfyve26 | zinc finger, FYVE domain co... | XM_017315013.1 | 16.9% | 17.5% | (many diffs) |
| 9 | mouse | 211978 | Zfyve26 | zinc finger, FYVE domain co... | NM_001008550.1 | 11.5% | 12% | (many diffs) |
| 10 | mouse | 211978 | Zfyve26 | zinc finger, FYVE domain co... | XM_006515647.2 | 11.5% | 12% | (many diffs) |
| 11 | mouse | 211978 | Zfyve26 | zinc finger, FYVE domain co... | XM_017315012.1 | 11.4% | 11.9% | (many diffs) |
| 12 | mouse | 211978 | Zfyve26 | zinc finger, FYVE domain co... | XM_017315011.1 | 11.4% | 11.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1047
- ORF length:
- 981
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CAACACCTAC TACCAGGAAT GCCTCTTCTA CCTGCACAAC TATAGCACCA 121 ACCTGGCCAT CATCAGCTTC TACGTGAGGC ACAGCTGCCT GCGGGAAGCT CTTCTGCACC 181 TTCTCAACAA GGAGAGTCCT CCAGAAGTTT TTATAGAAGG CATTTTCCAA CCAAGCTATA 241 AAAGTGGGAA GCTACACACT TTGGAGAACT TGCTAGAATC CATTGATCCA ACCTTGGAGA 301 GCTGGGGAAA GTACTTGATT GCTGCCTGCC AACATTTACA GAAGAAGAAC TACTACCACA 361 TTCTGTATGA GCTGCAGCAG TTTATGAAGG ACCAAGTTCG GGCCGCCATG ACCTGTATTC 421 GGTTCTTCAG TCACAAAGCA AAGTCATATA CAGAACTGGG AGAGAAGCTC TCATGGCTAC 481 TTAAGGCCAA GGACCACCTG AAGATCTACC TCCAAGAAAC ATCCCGCAGC TCTGGAAGGA 541 AGAAAACCAC ATTCTTCAGA AAGAAGATGA CTGCAGCTGA TGTGTCAAGG CACATGAACA 601 CACTTCAGCT GCAGATGGAA GTGACCAGGT TCTTGCATCG GTGCGAAAGT GCTGGGACCT 661 CTCAAATCAC CACTTTGCCT CTGCCAACCC TGTTTGGAAA TAACCACATG AAAATGGATG 721 TTGCCTGCAA GGTCATGCTG GGAGGGAAAA ATGTAGAAGA TGGTTTTGGA ATTGCTTTCC 781 GTGTTCTGCA GGACTTCCAG CTGGATGCTG CCATGACCTA CTGCAGAGCT GCCCGCCAGT 841 TGGTGGAGAA AGAGAAGTAC AGTGAGATCC AGCAACTGCT CAAATGTGTC AGTGAGTCAG 901 GCATGGCAGC CAAAAGTGAC GGGGACACCA TCCTCCTCAA CTGCCTGGAA GCGTTCAAGA 961 GAATTCCGCC CCAGGAGCTG GAGGGCCTGA TCCAGGCAAT ACACAATGAT GACAACAAGG 1021 TGAGCGGAAT TGTCTCCAAA CGCTGGTGCC CAACTTTCTT GTACAAAGTt ggcattataa 1081 gaaagcattg cttatcaatt tgttgcaacg aac