Construct: ORF ccsbBroadEn_11775

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016727.1_s300c1, BRDN0000385772
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SUMF2 (25870)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25870 SUMF2 sulfatase modifying factor 2 NM_001130069.4 91.3% 91.1% 1_87del;153C>A
2 human 25870 SUMF2 sulfatase modifying factor 2 XM_011515254.3 65.2% 54.4% (many diffs)
3 human 25870 SUMF2 sulfatase modifying factor 2 NM_015411.4 57.6% 55.4% (many diffs)
4 human 25870 SUMF2 sulfatase modifying factor 2 NM_001042468.3 57.2% 55% (many diffs)
5 human 25870 SUMF2 sulfatase modifying factor 2 NM_001366648.2 55% 54.3% (many diffs)
6 human 25870 SUMF2 sulfatase modifying factor 2 NM_001042469.3 53.7% 51.4% (many diffs)
7 human 25870 SUMF2 sulfatase modifying factor 2 NM_001366647.2 51.5% 50.6% (many diffs)
8 human 25870 SUMF2 sulfatase modifying factor 2 NM_001366649.2 45.9% 39.6% (many diffs)
9 human 25870 SUMF2 sulfatase modifying factor 2 NM_001146333.2 45.9% 43.3% 0_1ins177;412_556del;639_640ins259
10 human 25870 SUMF2 sulfatase modifying factor 2 NM_001042470.3 45.3% 32.9% (many diffs)
11 human 25870 SUMF2 sulfatase modifying factor 2 XR_001744616.1 32.5% (many diffs)
12 human 25870 SUMF2 sulfatase modifying factor 2 XR_001744617.1 30.7% (many diffs)
13 human 25870 SUMF2 sulfatase modifying factor 2 XR_002956418.1 29.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
996
ORF length:
930
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT CCAACTGCAG GGTGGGAGAT TCCTGATGGG AACAAATTCT CCAGACAGCA
121GAGATGGTGA AGGGCCTGTG CGGGAGGCGA CAGTGAAACC CTTTGCCATC GACATATTTC
181CTGTCACCAA CAAAGATTTC AGGGATTTTG TCAGGGAGAA AAAGTATCGG ACAGAAGCTG
241AGATGTTTGG ATGGAGCTTT GTCTTTGAGG ACTTTGTCTC TGATGAGCTG AGAAACAAAG
301CCACCCAGCC AATGAAGTCT GTACTCTGGT GGCTTCCAGT GGAAAAGGCA TTTTGGAGGC
361AGCCTGCAGG TCCTGGCTCT GGCATCCGAG AGAGACTGGA GCACCCAGTG TTACACGTGA
421GCTGGAATGA CGCCCGTGCC TACTGTGCTT GGCGGGGAAA ACGACTGCCC ACGGAGGAAG
481AGTGGGAGTT TGCCGCCCGA GGGGGCTTGA AGGGTCAAGT TTACCCATGG GGGAACTGGT
541TCCAGCCAAA CCGCACCAAC CTGTGGCAGG GAAAGTTCCC CAAGGGAGAC AAAGCTGAGG
601ATGGCTTCCA TGGAGTCTCC CCAGTGAATG CTTTCCCCGC CCAGAACAAC TACGGATGGG
661CAACACTCCA GATTCAGCCT CAGACAACCT CGGTTTCCGC TGTGCTGCAG ACGCAGGCCG
721GCCGCCAGGG GAGCTGTAAG CAGCCGGGTG GTGACAAGGA GAAAAGCCTT CTAGGGTCAC
781TGTCATTCCC TGGCCATGTT GCAAACAGCG CAATTCCAAG CTCGAGAGCT TCAGCCTCAG
841GAAAGAACTT CCCCTTCCCT GTCTCCCATC CCTCTGTGGC AGGCGCCTCT CACCAGGGCA
901GGAGAGGACT CAGCCTCCTG TGTTTTGGAG AAGGGGCCCA ATGTGTGTTG ACGATGGCTG
961GGGGCCAGGT GTTTCTGTTA GAGGCCAAGT ATTATTGCCC AACTTTCTTG TACAAAGTtg
1021gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)

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